RnoINT0097389 @ rn6
Intron Retention
Gene
ENSRNOG00000013641 | Myo7a
Description
myosin VIIA [Source:RGD Symbol;Acc:628830]
Coordinates
chr1:163018972-163020540:-
Coord C1 exon
chr1:163020313-163020540
Coord A exon
chr1:163019143-163020312
Coord C2 exon
chr1:163018972-163019142
Length
1170 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
ATGGCGTGTGTCATCCTCAGGAG
3' ss Score
7.98
Exon sequences
Seq C1 exon
GTATCCTCCCTGGGCAGTGGCAGTGACCACGTCATGGACGCAATCTCCCAGTGCGAGCAGTATGCCAAGGAGCAGGGTGCACAGGAGCGCAACGCCCCCTGGAGGCTCTTCTTCAGAAAGGAGGTCTTCACACCCTGGCACAACCCCTCGGAGGACAACGTGGCCACCAACCTCATCTACCAGCAGGTGGTGCGAGGAGTCAAGTTTGGGGAGTACAGGTGTGAGAAG
Seq A exon
GTAAGTGGGGTGCACAAGTCACAAGGGGCCATGGCTGCCTGTTTCCTGTCCACAGGCTAAGGGCGATTGTCAGATGGTGACGACACTGGCTGGGGAGCAGTTGGACGTTTCCCGGGTTTCTTGTAGATTCGGTGCTACTAACCTCACATGAGCTGTGTGAGTGGATGCTTAGAAAGCTGTCCTGCTTACCCACGGGAAGGGGTCCATGCACTCTGCAGTGCGCATGCGTGATTCCTGTAGGGGCTGACGGGCATACGTGTATGGTTCTTAGTCTAGGAAGTGCTCTGAAGGAGAAGATCCGATCATTTAGATCAGGATTTGCAGGTGTTTCCCAGTTTACCTCCTTTTGGGGGGACAGAATTGAGGGTCTTGTTTCTGAAGTAGTGGTGGGGCTTCCTGTCAGCGATGGCAGGATAAAGATGGACTGCTGATGCTAACAGTGGTTGGTGGTGGCGATGGTGGCAAAGGTGACATTGGTGATACGGCAGTGCTGGTGGTGATGCTGTATATGCTGATAAGCTAATTCTGATTCTATTAGAGCCACCACACTGGCTACCAAAATTGGGAACCATTTCCTACCTAAAAAGTAGTTGTCTACACGGTCCCTGAGAGCCTCCTCTGTCACTCTGTTACTCTATAGAAACACCAGGAGCCTCAGGGGAGTTCTGCCCTGGCTGCTGGGCACCAGCCTTGTCAGAGAAGAAGAGCCCAGCCCAGGCTGGACTCTCACCTGGCTCTCTGAAGTACAGCAGGGTTGTTACCATAGTGATGGGGATGGGGATGGTGGCAGTGACGTGCCATTTCCCAGCAGATCATCTCCAGTGTCCTACCCCCCAAGACAGGGCTGCTAACCCACGTGGCTTTCATGCAGCACTGAGCCCTAGCTGTCTGACCACCACCAACTAGGCTGCCTGCTCTCTTCTGCTCAGTTTTTGTGCCCCCGGACAGAAGCCAGCTCTGTGCTAGTGCCAAGGGGACCAGGCACAGGGCAAGAGCATGACTGTGGGCTTAGGGACCTTATAAGTTGCCCTGTGAAGAGAAGTAAAGCAGGGAGAACACAGGGTCCTGAGGATCAAGGTTCCCAAGCTCTACAGGAGGCACAGCTGGGAACGGGGCCGGGGCTGGAAGGGCATCCCCAGGGATGGTGACAATGGCGTGTGTCATCCTCAG
Seq C2 exon
GAGGATGACCTGGCCGAGTTGGCCTCCCAGCAGTACTTTGTGGACTATGGTTCTGAGATGATTCTGGAGCGTCTGCTGAGCCTCGTGCCCACTTACATTCCTGACCGTGAGATCACACCGCTAAAGAATCTTGAGAAGTGGGCACAGCTGGCTATTGCTGCCCACAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013641:ENSRNOT00000019053:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093795=FERM_N=PD(47.3=56.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATGGACGCAATCTCCCAG
R:
GCTGTGCCCACTTCTCAAGAT
Band lengths:
346-1516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]