GgaINT0031419 @ galGal4
Intron Retention
Gene
ENSGALG00000001936 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr9:863585-864406:+
Coord C1 exon
chr9:863585-863812
Coord A exon
chr9:863813-864238
Coord C2 exon
chr9:864239-864406
Length
426 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
TAATGGCTTAATTGTTTCAGGAG
3' ss Score
4.22
Exon sequences
Seq C1 exon
GTGTGGTCACTGGGTGGAGGACGGGATCACGTCCTAGATGCCATCTCTCAGTGTGAGCAGCTGGTGAAGGAGCGGGGCACGCATGAACGCCATGCACCCTGGAGACTTTACTTTCGGAAGGAAATTTTCACCCCATGGCACAACTCCCAGGAGGATCCCATCAGCACTGATCTCATTTACCACCAGGTCATTCGTGGGATCCGGTTTGGAGAATACCGTTGTGAGAAG
Seq A exon
GTGTGTCTCCTTATTCATCCTCCTAAAGAGAGCAAACTAAGTGAACATTTCCTGTGCATTTAAAAGCAAGAGGATGAACAAAGTTGCTAGCAGCTGTGAACAGCTCTTCCTTTCTAAGGGACAATTCCAGTCCAGGTGATTGTGCCAGCTGTCACAATACGGCCAGCTGTAATAGTTCTTTGCTTGCAAATTTCAGTTCATGTGACAGCTAGAGGCATGTTTCAGAGGGGGCAGTTTGGGTCCTTTTTAAATATCTTTGCTAATAATCTCTTTGATGCTGTGACTGTGTGAAGTTCCTCTTTCCTTATGCTGGGTGGCTGTCAAGAGTTATCTAGAAAAAAATGGAGAAAACTGCCTTCAAGCTTGAACTTAGCTGGGCTTTGTGACATCTTCCTTAGCCTTCTTTTAATGGCTTAATTGTTTCAG
Seq C2 exon
GAGGAGGATTTGGTGGAGATAGGTGCCAAGTATTGTTACATCCAGTTTGGAGATACTATCCACAATGAACTTGTGCAGAAAGTGCTCCATGACTGCATCCCAGTGAAACAGCTGAAGTCCAAGCCCCTGGAAAAGTGGGTGAGCCTTATCACCTACGCACATGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001936:ENSGALT00000002994:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATCACGTCCTAGATGCCA
R:
CACTTTTCCAGGGGCTTGGAC
Band lengths:
343-769
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]