BtaINT0098347 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039803 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:4821408-4822149:-
Coord C1 exon
chr2:4822043-4822149
Coord A exon
chr2:4821594-4822042
Coord C2 exon
chr2:4821408-4821593
Length
449 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCG
5' ss Score
10.05
3' ss Seq
CCAGCTTTTCCTTCACCCAGGAG
3' ss Score
6.95
Exon sequences
Seq C1 exon
GGGCCCCTGTGACAATCCCCTATCAGGTATATTTCATGCGGAAACTGTGGCTCAACGTGGCCCCTGGGAAAGATGTGAAGGCAGACACCATCCTTCATTACCACCAG
Seq A exon
GTACCGGGCTGCCCCTCCTGGGGGTGTTGGGGCCACTCTTCTCAGTCACACCTGCCCTCAGAGTGGGGCATGGCCTCTTTGCCCAGGGCCACCCACCTCCTGCCCAGGGCCTCGTGGTCGGTCAGGGTTCTGGAGCCAGGAGCAGATGGAGAGCACTGCCTGGGGCAGCGGCACCTGCAGACAGTGGCTGTACCCTCACCTGCAACATGCCTACCGGCGAGGGGAGGACCCAGAGGGTCCCGCGCCTGCCAAGTGCTAGGCCTTGCCCCGAAGGGGTAGAGCAGGCCCGGCTCTCCAGCGAGGCGCTCAGCCATCTTCCCTCTGCTGGAAACCTAACCCTGAGGACCTTATCTCTCTGCAGGCTCCGTTTCCTACATTCTACTGGGCTACCACCTGAGCGCAAAGCTGGGGGTGGCAGGAGCCTAAAATCCAGCTTTTCCTTCACCCAG
Seq C2 exon
GAGCTGCCCAAGTACCTGCGTGGGTTCCACAAGTGTTCCAGGGAGGATGCCATCCACCTGGCCAGCCTAATCTACAAGGCCAGGTTTGGTGATGACCGGCCCCAGCTAGCCAGCATCCCCAAGATCCTGCGGGAACTCGTGCCTGAGAACCTCACGCGCCTAATGTCCCCAGAGGAATGGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039803:ENSBTAT00000061382:48
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=PU(13.9=44.4)
A:
NA
C2:
PF0037313=FERM_M=FE(53.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCTGTGACAATCCCCTAT
R:
TCTTCCATTCCTCTGGGGACA
Band lengths:
289-738
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]