RnoINT0097449 @ rn6
Intron Retention
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24748611-24749322:-
Coord C1 exon
chr18:24749216-24749322
Coord A exon
chr18:24748797-24749215
Coord C2 exon
chr18:24748611-24748796
Length
419 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
CCAGCATGTCTGCCACTCAGGAG
3' ss Score
3.54
Exon sequences
Seq C1 exon
GGGCCTCCACGACACTCCCCTACCAGGTGTTCTTCATGCGGAAACTGTGGCTCAATGTGACCCCTGGGAAGGACGTGAATGCAGACACCATACTCCATTACCACCAG
Seq A exon
GTACCCATCAGGTGGCCCTCTTGATGACACACGAGCCATTGCCATCCTATCCCAAACCGGTCCTGAGACAGGAGGAGGAAGGGCCAGCGAGGCACTGCCTTGCCCCAGGTTCTTACAACAGGGTAGAACGAGGTGAGCAGGCCAGACCCCGGAAGGTTCCGGGGACCACAGAGGCAGCAGCTCTGGGGAAACAGTCTACAGTGTGAGGCTACGGGAGAAAAGCACACAGAAGGCCGAACACAGTGAACCGGCTTACAGCTTCCAAGGATGGCATCATGGGGACAGAACCCATGTCCACCACAGCACGGGATTAGCCAGCCCTCACTTAGGCCTTCGGTCTGCTCAGTTAGTGAACAGGGAAGATAACAATCCCCACTCCAGGCTTCTGTCACCTGAGGCCCAGCATGTCTGCCACTCAG
Seq C2 exon
GAGCTACCCAAGTACATGCGTGGGTTTCACAAGTGCTCCCGGGAAGACGCCATCTACCTGGCAGGCCTCATCTATAAAATCCAGTTTGGCAGCGATCGATCTCAAATGGCCAGTGTCTCGAAGATCCTGAAGGAGCTGGTACCTCAGAACCTCACACGCCTGATGTCCTCAGAGGAATGGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035:ENSRNOT00000021405:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093795=FERM_N=PD(18.1=47.2),PF0037313=FERM_M=PU(13.9=44.4)
A:
NA
C2:
PF0037313=FERM_M=FE(53.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCTCCACGACACTCC
R:
TGAGGACATCAGGCGTGTGAG
Band lengths:
278-697
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]