MmuINT0104624 @ mm10
Intron Retention
Gene
ENSMUSG00000024388 | Myo7b
Description
myosin VIIB [Source:MGI Symbol;Acc:MGI:107709]
Coordinates
chr18:31961175-31961914:-
Coord C1 exon
chr18:31961808-31961914
Coord A exon
chr18:31961361-31961807
Coord C2 exon
chr18:31961175-31961360
Length
447 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
CCAGCATGTCTGCCACTCAGGAA
3' ss Score
4.43
Exon sequences
Seq C1 exon
GGGCCTCCGTGACACTTCCCTATCAGGTGTTCTTCATGCGGAAACTGTGGCTCAACGTGACCCCTGGGAAGGACGTGAATGCAGACACCATACTCCATTACCACCAG
Seq A exon
GTACCCATCAGGCGGCCCTCTTGAAGACAGACACAAGAGCCATTGCCATCCTAGCCCAAACCTGTCCTGAGACAGGAAGGGGAAGGGGCCAGGGAGGGACTGTCTTGCCCCAGGTTCTTGCAGCAGGGTGGAATGAGGTGAACAGACCAAACCCCAGAGGGTCCCAGGGACAACAGAGCACAGCAGCTCTGGGGACACAGCCTACAGTGTAAGGCTGGGGAAGAGCAGCATACAGAAGACTGAATGCAATGAACCAGCTTGCAACTTGCAGGGACAACATCATGTGGACAGAACCCAAGTCCACCACAGCACAGTACTAGCAAGCTCTCACTTAGGTCTCTCCCCTGAGAGCCTCAGCCTTTGACCTGCTCAGTTAGTGAATGGGGAAGATAACACACCCTCACTCCAGGCTCCTGTCACCTGAGGCCCAGCATGTCTGCCACTCAG
Seq C2 exon
GAACTACCCAAGTACCTCCGCGGGTTTCACAAGTGCTCCCGGGAAGATGCCATCCACCTGGGAGGTCTCATCTGTAAAATCCAGTTTGGTAGTGACAGCTCGCAACTGGCTAGTGTCTCAAAGGTCCTGAAGGAGCTGGTACCTCAGAACCTCACACGCCTGATGTCCTCAGAAGAATGGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024388:ENSMUST00000134663:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=PU(13.9=44.4)
A:
NA
C2:
PF0037313=FERM_M=FE(53.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCGTGACACTTCCCTAT
R:
TTTCCATTCTTCTGAGGACATCA
Band lengths:
288-735
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types