GgaINT0031432 @ galGal3
Intron Retention
Gene
ENSGALG00000001936 | MYO7B
Description
NA
Coordinates
chr9:2310052-2310737:+
Coord C1 exon
chr9:2310052-2310158
Coord A exon
chr9:2310159-2310551
Coord C2 exon
chr9:2310552-2310737
Length
393 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TCAGAGTTGGTCTCTTCCAGGAG
3' ss Score
5.51
Exon sequences
Seq C1 exon
GTGCCACTATGTCTGTAGCTTATGAAGTGTACTTCATGAGAAAGCTGTGGTTGAATGTAACTCCTGGGAAGGACCTAAAAGCTGATTCTATTTTTCATTACCACCAG
Seq A exon
GTAAGCTCCCTAAAGCATAAAGGTAACAGCAGTCAACACCAGGCAAGAAATACTGGAGAAAAAGTAACCATGCTGGAATGTTACCTTCTCCCTCTCCAACAGGGCGCCTCTGGGCAGCACAGCTTAGCCTCTGAAACAAACTTAGGTCACGCAGTGCTTACACCTTAGCTACACAGTTATGGTAACAACACAGCTCCTTAATCTAACTGTTCCTTGGAGGTACTCATCTTCCTCCATGACTATATGCAGAACCTCCAGAAGGAGCCACAGGTTCTTGGGATGCCCCTGGACTGTGCCTGGTGACACTCTCAGCCCAACCTCACAGGTTTAGCATGACTAAGTCAGTGTTTGCTTCAGCCCTTTCTGTCTGGATTCAGAGTTGGTCTCTTCCAG
Seq C2 exon
GAGCTGCCGAAGTACCTCAGAGGCTACCACAACTGTTCCAGAGATGAAGCTGTCCAGCTGGCAGGGCTGATTTATAAAGTGCGCTTCAACACCGACCGCACACAGCTGGCAACCATCCCCAAAATCCTGAAGGAGTTGGTGCCAGACAATCTGCTTCGAGTGACCTCACCAGATGAGTGGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001936:ENSGALT00000002994:44
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093795=FERM_N=PD(18.1=47.2),PF0037313=FERM_M=PU(11.6=36.1)
A:
NA
C2:
PF0037313=FERM_M=FE(54.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCACTATGTCTGTAGCTT
R:
CTTCTTCCACTCATCTGGTGA
Band lengths:
293-686
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]