BtaINT0098348 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039803 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:4821085-4821593:-
Coord C1 exon
chr2:4821408-4821593
Coord A exon
chr2:4821202-4821407
Coord C2 exon
chr2:4821085-4821201
Length
206 bp
Sequences
Splice sites
5' ss Seq
AAGGTCCTT
5' ss Score
1.62
3' ss Seq
CTGGTCCTGGATTCCCCTAGAAC
3' ss Score
6.73
Exon sequences
Seq C1 exon
GAGCTGCCCAAGTACCTGCGTGGGTTCCACAAGTGTTCCAGGGAGGATGCCATCCACCTGGCCAGCCTAATCTACAAGGCCAGGTTTGGTGATGACCGGCCCCAGCTAGCCAGCATCCCCAAGATCCTGCGGGAACTCGTGCCTGAGAACCTCACGCGCCTAATGTCCCCAGAGGAATGGAAGAAG
Seq A exon
GTCCTTGTTGGGGGCTGGGGAGGGGGCCCTTGGCTGCTGCCCCTGTAGGGGTCCTGCCCACGTGTGGCTGTGGGAGGGTGGACTGGGTCTGCCACCCCCGGCCTCGGGCAGCGGCTTTTGTTCTGGCTGGGGCCGCAGAGCCTCGGGTGGTGGGCCAGCCAAGCTGTGGTCTCCACTGAGACCTCACTGGTCCTGGATTCCCCTAG
Seq C2 exon
AACATCCTCCTGGCCTGCAACAAGCACAAGGACAAGACGGTGGAGGAGGCCAAGGTGGCCTTCCTGAAGTGGATCTGCCGGTGGCCCACCTTTGGGTCTGCCTTCTTTGAGGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039803:ENSBTAT00000061382:49
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=FE(53.0=100)
A:
NA
C2:
PF0037313=FERM_M=PD(30.4=89.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTACCTGCGTGGGTTCC
R:
CACCTCAAAGAAGGCAGACCC
Band lengths:
292-498
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]