RnoINT0097450 @ rn6
Intron Retention
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24748327-24748796:-
Coord C1 exon
chr18:24748611-24748796
Coord A exon
chr18:24748444-24748610
Coord C2 exon
chr18:24748327-24748443
Length
167 bp
Sequences
Splice sites
5' ss Seq
AAGGTCCTT
5' ss Score
1.62
3' ss Seq
GTGTCCCTCTCTTCCATCAGAGC
3' ss Score
10.12
Exon sequences
Seq C1 exon
GAGCTACCCAAGTACATGCGTGGGTTTCACAAGTGCTCCCGGGAAGACGCCATCTACCTGGCAGGCCTCATCTATAAAATCCAGTTTGGCAGCGATCGATCTCAAATGGCCAGTGTCTCGAAGATCCTGAAGGAGCTGGTACCTCAGAACCTCACACGCCTGATGTCCTCAGAGGAATGGAAAAAG
Seq A exon
GTCCTTAACAGGGCTGGGTGGCTTGGGATGTGGGCTGCCTGCACCTGTCCTGTCCTTACTACCTCTGAGGCCCTGCCCTACACTGACTTCCAGTGAGTGTAGCGCTGGCCCGAGTCTCAGAGCCGCTGGGTGTCCATGTCCTATACAGTGTCCCTCTCTTCCATCAG
Seq C2 exon
AGCCTCCTTCTGGAATGTGACAAACACAAGAATAAGTCAGTGGCCGAGGCCAAGGTGGAATTCCTGAAGCGGATCTACCGATGGCCTACCTTTGGATCTGCCTTCTTTGAGGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035:ENSRNOT00000021405:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=FE(53.0=100)
A:
NA
C2:
PF0037313=FERM_M=PD(30.4=89.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACCCAAGTACATGCGTGG
R:
CAGGAATTCCACCTTGGCCTC
Band lengths:
250-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]