HsaINT0108986 @ hg38
Intron Retention
Gene
ENSG00000169994 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:127635722-127636324:+
Coord C1 exon
chr2:127635722-127635907
Coord A exon
chr2:127635908-127636207
Coord C2 exon
chr2:127636208-127636324
Length
300 bp
Sequences
Splice sites
5' ss Seq
AAGGTCCCT
5' ss Score
0.61
3' ss Seq
CTGGCCCTCCTGTCCCCCAGAGC
3' ss Score
9.75
Exon sequences
Seq C1 exon
GAGCTGCCCAAGTACCTGCGCGGATTCCACAAGTGTTCGCGGGAGGATGCCATCCACCTGGCGGGCCTCATCTACAAGGCCCAGTTCAACAACGACCGGTCCCAGCTGGCTAGTGTCCCCAAGATCCTGAGGGAACTGGTGCCTGAGAACCTCACACGCCTGATGTCCTCGGAGGAGTGGAAAAAG
Seq A exon
GTCCCTGGTCGGGCTGGGGAAGGGTTCTTGTGCTGCTGCTCCTCCCTGGGCCCCTGCACCAGTGCCATGCCCTGCCTGGGCTCCAAGATCACATGGGTGCACATGGGTGGTGTGGAGGGTGGGCTGGCTCTGCACACACCACGCCTTCCTATGCCATCCACAGCACCGAGACTGTCCCATGCTGCATTCCTCCCCTCCCCTCCCCACCGTACTAGCCCTGGGGTAGGCAGGTGCTGCCCCCACCAGGGCTTTGGAGGGCCTCTGGGCACCCAAGTCCTTACTGGCCCTCCTGTCCCCCAG
Seq C2 exon
AGCATCCTTCTAGCCTATGACAAGCATAAGGACAAGACAGTGGAGGAGGCCAAGGTGGCCTTCCTGAAGTGGATCTGCCGGTGGCCCACCTTCGGATCCGCCTTCTTCGAGGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169994:ENST00000409816:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=FE(53.0=100)
A:
NA
C2:
PF0037313=FERM_M=PD(30.4=89.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGCCCAAGTACCTGC
R:
TTCACCTCGAAGAAGGCGGAT
Band lengths:
302-602
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development