HsaINT0108986 @ hg19
Intron Retention
Gene
ENSG00000169994 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:7607]
Coordinates
chr2:128393297-128393899:+
Coord C1 exon
chr2:128393297-128393482
Coord A exon
chr2:128393483-128393782
Coord C2 exon
chr2:128393783-128393899
Length
300 bp
Sequences
Splice sites
5' ss Seq
AAGGTCCCT
5' ss Score
0.61
3' ss Seq
CTGGCCCTCCTGTCCCCCAGAGC
3' ss Score
9.75
Exon sequences
Seq C1 exon
GAGCTGCCCAAGTACCTGCGCGGATTCCACAAGTGTTCGCGGGAGGATGCCATCCACCTGGCGGGCCTCATCTACAAGGCCCAGTTCAACAACGACCGGTCCCAGCTGGCTAGTGTCCCCAAGATCCTGAGGGAACTGGTGCCTGAGAACCTCACACGCCTGATGTCCTCGGAGGAGTGGAAAAAG
Seq A exon
GTCCCTGGTCGGGCTGGGGAAGGGTTCTTGTGCTGCTGCTCCTCCCTGGGCCCCTGCACCAGTGCCATGCCCTGCCTGGGCTCCAAGATCACATGGGTGCACATGGGTGGTGTGGAGGGTGGGCTGGCTCTGCACACACCACGCCTTCCTATGCCATCCACAGCACCGAGACTGTCCCATGCTGCATTCCTCCCCTCCCCTCCCCACCGTACTAGCCCTGGGGTAGGCAGGTGCTGCCCCCACCAGGGCTTTGGAGGGCCTCTGGGCACCCAAGTCCTTACTGGCCCTCCTGTCCCCCAG
Seq C2 exon
AGCATCCTTCTAGCCTATGACAAGCATAAGGACAAGACAGTGGAGGAGGCCAAGGTGGCCTTCCTGAAGTGGATCTGCCGGTGGCCCACCTTCGGATCCGCCTTCTTCGAGGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169994-MYO7B:NM_001080527:43
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=FE(53.0=100)
A:
NA
C2:
PF0037313=FERM_M=PD(30.4=89.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGCCCAAGTACCTGC
R:
TTCACCTCGAAGAAGGCGGAT
Band lengths:
302-602
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)