HsaEX0041265 @ hg19
Exon Skipping
Gene
ENSG00000169994 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:7607]
Coordinates
chr2:128393297-128394203:+
Coord C1 exon
chr2:128393297-128393482
Coord A exon
chr2:128393783-128393899
Coord C2 exon
chr2:128394120-128394203
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTGGCCCTCCTGTCCCCCAGAGC
3' ss Score
9.75
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GAGCTGCCCAAGTACCTGCGCGGATTCCACAAGTGTTCGCGGGAGGATGCCATCCACCTGGCGGGCCTCATCTACAAGGCCCAGTTCAACAACGACCGGTCCCAGCTGGCTAGTGTCCCCAAGATCCTGAGGGAACTGGTGCCTGAGAACCTCACACGCCTGATGTCCTCGGAGGAGTGGAAAAAG
Seq A exon
AGCATCCTTCTAGCCTATGACAAGCATAAGGACAAGACAGTGGAGGAGGCCAAGGTGGCCTTCCTGAAGTGGATCTGCCGGTGGCCCACCTTCGGATCCGCCTTCTTCGAGGTGAAG
Seq C2 exon
CAAACCTCGGAGCCTTCCTACCCGGACGTCATCCTCATCGCCATCAACCGACATGGGGTTCTGCTCATCCACCCCAAGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169994_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=FE(53.0=100)
A:
PF0037313=FERM_M=PD(30.4=89.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTCCACAAGTGTTCGCGGG
R:
CTTGGGGTGGATGAGCAGAAC
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)