RnoEX6058357 @ rn6
Exon Skipping
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24747504-24748796:-
Coord C1 exon
chr18:24748611-24748796
Coord A exon
chr18:24748327-24748443
Coord C2 exon
chr18:24747504-24747587
Length
117 bp
Sequences
Splice sites
3' ss Seq
GTGTCCCTCTCTTCCATCAGAGC
3' ss Score
10.12
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
GAGCTACCCAAGTACATGCGTGGGTTTCACAAGTGCTCCCGGGAAGACGCCATCTACCTGGCAGGCCTCATCTATAAAATCCAGTTTGGCAGCGATCGATCTCAAATGGCCAGTGTCTCGAAGATCCTGAAGGAGCTGGTACCTCAGAACCTCACACGCCTGATGTCCTCAGAGGAATGGAAAAAG
Seq A exon
AGCCTCCTTCTGGAATGTGACAAACACAAGAATAAGTCAGTGGCCGAGGCCAAGGTGGAATTCCTGAAGCGGATCTACCGATGGCCTACCTTTGGATCTGCCTTCTTTGAGGTGAAG
Seq C2 exon
CAAACCTCTGAGCCTTCCTACCCAGACATCCTCCTCATTGCCATCAACCGACATGGGTTACTGCTCATCCACCCCAAGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035-'57-68,'57-67,58-68=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=FE(53.0=100)
A:
PF0037313=FERM_M=PD(30.4=89.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGCGTGGGTTTCACAAGT
R:
TCTTGGGGTGGATGAGCAGTA
Band lengths:
252-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]