GgaEX6045459 @ galGal4
Exon Skipping
Gene
ENSGALG00000001936 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr9:876555-878382:+
Coord C1 exon
chr9:876555-876740
Coord A exon
chr9:877430-877546
Coord C2 exon
chr9:878299-878382
Length
117 bp
Sequences
Splice sites
3' ss Seq
ATCCTTTTTTTCTTACACAGAGC
3' ss Score
8.96
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GAGCTGCCGAAGTACCTCAGAGGCTACCACAACTGTTCCAGAGATGAAGCTGTCCAGCTGGCAGGGCTGATTTATAAAGTGCGCTTCAACACCGACCGCACACAGCTGGCAACCATCCCCAAAATCCTGAAGGAGTTGGTGCCAGACAATCTGCTTCGAGTGACCTCACCAGATGAGTGGAAGAAG
Seq A exon
AGCATTACTGCAGCATACAGCAAACATGAAGGAAAAACTGTGGATGAGGCCAAGATTGCCTTCTTGAAAATCATATACCGGTGGCCAACATTTGGATCAGCCTTCTTTGAGGTGAAG
Seq C2 exon
CAAACCTCTGAGCCAAATTTCCCAGAGATTGTGCTGATTGCAATCAACAAGCAAGGAGTCTCAGTGATACATCAGAAGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001936-'45-47,'45-46,46-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=FE(54.5=100)
A:
PF0037313=FERM_M=PD(31.2=89.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGAAGTACCTCAGAGGCTA
R:
AGACTCCTTGCTTGTTGATTGCA
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]