BtaEX6008395 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039803 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:4820819-4821593:-
Coord C1 exon
chr2:4821408-4821593
Coord A exon
chr2:4821085-4821201
Coord C2 exon
chr2:4820819-4820902
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTGGTCCTGGATTCCCCTAGAAC
3' ss Score
6.73
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GAGCTGCCCAAGTACCTGCGTGGGTTCCACAAGTGTTCCAGGGAGGATGCCATCCACCTGGCCAGCCTAATCTACAAGGCCAGGTTTGGTGATGACCGGCCCCAGCTAGCCAGCATCCCCAAGATCCTGCGGGAACTCGTGCCTGAGAACCTCACGCGCCTAATGTCCCCAGAGGAATGGAAGAAG
Seq A exon
AACATCCTCCTGGCCTGCAACAAGCACAAGGACAAGACGGTGGAGGAGGCCAAGGTGGCCTTCCTGAAGTGGATCTGCCGGTGGCCCACCTTTGGGTCTGCCTTCTTTGAGGTGAAG
Seq C2 exon
CAAACCTCGGAGCCCTCCCACCCGGACATCATCCTCATCGCCATCAACCGGCACGGGGTCCTGCTCATCCACCCCAAGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039803-'56-59,'56-58,57-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=FE(53.0=100)
A:
PF0037313=FERM_M=PD(30.4=89.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCCACAAGTGTTCCAGGG
R:
CTTGGTCTTGGGGTGGATGAG
Band lengths:
248-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]