GgaEX6045459 @ galGal3
Exon Skipping
Gene
ENSGALG00000001936 | MYO7B
Description
NA
Coordinates
chr9:2310552-2312379:+
Coord C1 exon
chr9:2310552-2310737
Coord A exon
chr9:2311427-2311543
Coord C2 exon
chr9:2312296-2312379
Length
117 bp
Sequences
Splice sites
3' ss Seq
ATCCTTTTTTTCTTACACAGAGC
3' ss Score
8.96
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GAGCTGCCGAAGTACCTCAGAGGCTACCACAACTGTTCCAGAGATGAAGCTGTCCAGCTGGCAGGGCTGATTTATAAAGTGCGCTTCAACACCGACCGCACACAGCTGGCAACCATCCCCAAAATCCTGAAGGAGTTGGTGCCAGACAATCTGCTTCGAGTGACCTCACCAGATGAGTGGAAGAAG
Seq A exon
AGCATTACTGCAGCATACAGCAAACATGAAGGAAAAACTGTGGATGAGGCCAAGATTGCCTTCTTGAAAATCATATACCGGTGGCCAACATTTGGATCAGCCTTCTTTGAGGTGAAG
Seq C2 exon
CAAACCTCTGAGCCAAATTTCCCAGAGATTGTGCTGATTGCAATCAACAAGCAAGGAGTCTCAGTGATACATCAGAAGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001936-'44-45,'44-44,45-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=FE(54.5=100)
A:
PF0037313=FERM_M=PD(31.2=89.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGAAGTACCTCAGAGGCTA
R:
AGACTCCTTGCTTGTTGATTGCA
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]