MmuEX6000759 @ mm10
Exon Skipping
Gene
ENSMUSG00000024388 | Myo7b
Description
myosin VIIB [Source:MGI Symbol;Acc:MGI:107709]
Coordinates
chr18:31960036-31961360:-
Coord C1 exon
chr18:31961175-31961360
Coord A exon
chr18:31960840-31960956
Coord C2 exon
chr18:31960036-31960119
Length
117 bp
Sequences
Splice sites
3' ss Seq
GTGTCCCTCTCTTCCATCAGAGC
3' ss Score
10.12
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GAACTACCCAAGTACCTCCGCGGGTTTCACAAGTGCTCCCGGGAAGATGCCATCCACCTGGGAGGTCTCATCTGTAAAATCCAGTTTGGTAGTGACAGCTCGCAACTGGCTAGTGTCTCAAAGGTCCTGAAGGAGCTGGTACCTCAGAACCTCACACGCCTGATGTCCTCAGAAGAATGGAAAAAG
Seq A exon
AGCCTCCTTCTGGAATGTGACAAAAACAAGCGCAAGACAGTGGCAGAGGCCAAAGTGGAGTTCTTGAAGTACATGTACAGGTGGCCCACCTTTGGGTCTGCCTTCTTTGAGGTGAAG
Seq C2 exon
CAAACCTCTGAGCCTTCCTACCCAGACATTCTCCTCATCGCCATCAACCGACATGGGTTACTGCTCATCCACCCCAAGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024388-'55-69,'55-68,56-69
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=FE(53.0=100)
A:
PF0037313=FERM_M=PD(30.4=89.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTACCCAAGTACCTCCGCG
R:
TAACCCATGTCGGTTGATGGC
Band lengths:
245-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types