GgaINT0031433 @ galGal4
Intron Retention
Gene
ENSGALG00000001936 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr9:876555-877546:+
Coord C1 exon
chr9:876555-876740
Coord A exon
chr9:876741-877429
Coord C2 exon
chr9:877430-877546
Length
689 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGA
5' ss Score
9.78
3' ss Seq
ATCCTTTTTTTCTTACACAGAGC
3' ss Score
8.96
Exon sequences
Seq C1 exon
GAGCTGCCGAAGTACCTCAGAGGCTACCACAACTGTTCCAGAGATGAAGCTGTCCAGCTGGCAGGGCTGATTTATAAAGTGCGCTTCAACACCGACCGCACACAGCTGGCAACCATCCCCAAAATCCTGAAGGAGTTGGTGCCAGACAATCTGCTTCGAGTGACCTCACCAGATGAGTGGAAGAAG
Seq A exon
GTACGAAAACCAGCACTGCTTTCATTAAGCATATTATTTCCGTAGAGCCTTATGAGAGAAGAACTACATCAAGCTACATTCCTTTTTGGATTTGAGACTTTGGAAGCACTGTATAATGATGTTATAGGACACTGCTGTTATGCCTCTCAAAGTTCAGATTTTGCATCATCTCCACCAGACCTCTGAAATAGGCCTGGAGAGCCTCTGTTCTTCAGAAACAGAAAATTAAAACTTGCTAAATAGTTCAAAGGTTGGCCAGCAAATCAGTGACCTTGCACTATGGGCACACTTCTCATGGCAAAAGGCCCTTTCGTTCACAGAAGGGCAAGAAAGATTCAGTAACTACTTCAAATACAGCTGGAGGGTCCACCCCAGAAAATGTGATCTGTGTCTATTGGGAACAGTAGTGTTCCAAGTCTTGTTTCGTCCCGTATTGCCCCTCTGCCCTGGAATCTGCTCCCTTCAGCTCACAGACTTCCTTCACCCAACACATGAGTAAGAAACAGTGGGGAGGTTTGGCCCCACCCTGCCCCATGGCACGGTAGGCTACTTTCATTGTCAAAGTCCTCCACTGCTGTGCAATGGTCACTCTTGTGATGGTGTGATTCTCTCTCTAGTGCTAATGCTGGACAATGGAAACCTACCTATCTCCAGCTGACTAGGCTGTGTATCCTTTTTTTCTTACACAG
Seq C2 exon
AGCATTACTGCAGCATACAGCAAACATGAAGGAAAAACTGTGGATGAGGCCAAGATTGCCTTCTTGAAAATCATATACCGGTGGCCAACATTTGGATCAGCCTTCTTTGAGGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001936:ENSGALT00000002994:45
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=FE(54.5=100)
A:
NA
C2:
PF0037313=FERM_M=PD(31.2=89.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGCCGAAGTACCTCAGA
R:
TTCACCTCAAAGAAGGCTGATCC
Band lengths:
302-991
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]