BtaINT0100315 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047061 | NDOR1
Description
Bos taurus NADPH dependent diflavin oxidoreductase 1 (NDOR1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046158]
Coordinates
chr11:105887221-105888362:-
Coord C1 exon
chr11:105888265-105888362
Coord A exon
chr11:105887320-105888264
Coord C2 exon
chr11:105887221-105887319
Length
945 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
CAGCTCTGTCTTCTCTGTAGGTT
3' ss Score
9.31
Exon sequences
Seq C1 exon
AGTTTCTGGAGGTTCATCTTCCGGAGGAGCCTGCCATCCACTGCCCTCCGTCAGATGGACTTTGCTGTGCTGGGTCTCGGGGACTCGTCTTACGCCAA
Seq A exon
GTGAGTAAGGGAGGGTGGACCTGTCCCCCGCGTGCACACAGTGGCCTGACAGAGGGATGTGTGACCCAGCCCCCAGGGCACCCCCTCGAGGCCATGGCCCTGGCCACACTTCCTGGCCCCACAGACGCTCCTTGGTGGCAGCTTCTCCATGGCCAGAAGCCCTGGGCTTGAAGGATAGGGTGGTTCATGCAAGAAGTGGGCAGGGCAGCCGGGGTGGGGGGCCTGGCTGGGGCCATGCCTGAGACACGGTCCAGGCAGGAACTGGTGTCCAGAGCCAGACCCCAGGGCCTGAGCCAGCGTCCTCTGTCAACCCATAACATAGGGCAACAAGGGAGCCCGGCTCAGCCCGCCTTCATAAGCAGCCTTTGGGGAGGGGTTCGAGCTTACGATGAGCACGGAGAACCGGGAGGTGTGAGCAGGCAGGGTGCAAAGGGCCCGGCCCCCGGAGCCGTTCCGTGGCCACCGCTGCCTGCCTCCGCTTTGCTCTCATTCACCGTTTTCACGGCACGTCTGTGTCCTGAGCAGAATGCTGTCGCTTTGCACTATTTCCCAGGGAAGTACCAAGGGCTTTGTGTTCAAGGGTGCACATGGCGTGGGGCTCCTGCAACATTAAAACCCCTAACTCTGCAGCTCGGAGCTGAGGGAGGGGGTCTCTGGGTATAGACGTAGCCTGAGGTCTAGAGTTGTCCAGGTGAAAAGGACGGAAAGTGGGTGGCTTGTGACCCTCGTCTGGGAAGGGTCTGGGGGCTTTGTTTAGTGTGAAACGTAGACGTCTGTTCCCACTGCCGGGCGCACCCATGGGGCAGGTGAGAGACCCTTCTGTCCCTTAGGGAGCCAGCAAAGGAACCTTTGGAGCCTTGGGAGCCTCACCCCGTGCAGCCCGCTGGGCGTGTACCTCCCGCCTGTGCAGGGCCAGGGCCAGCACCAGCTCTGTCTTCTCTGTAG
Seq C2 exon
GTTCAACTTCGTGGCCAAGAAGCTGCACCGCCGGCTGCTGCAGCTCGGGGGCAGCGCCCTCCTGCCCGTGTGCCTGGGCGATGACCAGCACGAACTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047061:ENSBTAT00000066145:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=FE(23.2=100)
A:
NA
C2:
PF0025820=Flavodoxin_1=FE(23.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGGAGGTTCATCTTCCGG
R:
CAGTTCGTGCTGGTCATCGC
Band lengths:
192-1137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development