GgaINT0126429 @ galGal3
Intron Retention
Gene
ENSGALG00000008920 | NDOR1
Description
NA
Coordinates
chr17:1344008-1344895:+
Coord C1 exon
chr17:1344008-1344105
Coord A exon
chr17:1344106-1344796
Coord C2 exon
chr17:1344797-1344895
Length
691 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
3' ss Seq
TGTGATTATTCTCTGCCTAGGTT
3' ss Score
8.45
Exon sequences
Seq C1 exon
ATGTTCTGGCGGTTTCTGTTCCGGAAGAACCTGCCGCCTACTTCCCTTTGCCAGATGGACTACGCCGTGCTGGGCCTTGGTGATTCCTCCTATCCCAA
Seq A exon
GTAAGCAACTCCTGCACTCCTTGCCTGCCCCGACAGCTGCTCCTTGCGGCTTGGGTGAGAGGGTGGGGAATGGAGTGAGCAAGCAGAGTCAGAGCCTGACGCTAGAACAGCAATTCAAGCAAAATCTAATTCCCACCTGTCTTCAAAATTCTTGCTCTACCAGTCTCTGTCCCTTCTAACCCCCAGGAGCTGGGCTTTTGCCGTGTTCTTCCTCCCAGCCTCTTCAAGCAGATACTTTGCTGCATTATTGCAGACATTGTTTCCTGGTCAGCTGTTACAGACACACAGCTCTCTGAATTGCAGGAAAACCTGTGTCACAAAAATTTCAGTGGACCAAGCTAGCAGAAGACATCAAATGTAGTTATAGGTCTCAGTTCTCTCCCAGATGTTATTCCCATGAGGGTCCATGGGGAGGGAAGTGTTTCTCCCTCTGGGGACCAAGCTGACCTGAAGGGAAACCAGACCCCTTGGAATCCCTTCTCCAAAGCTGGGCACAACCTGTGTGGCCTTACAAGCAGTAACAGCTGCTGCATCTCCGAGCTGTCCCACAGTAGAGGGCTGAGCAAGCATGGCATAGGCTCGGGCATGGCTCTGGCATAGGCCTCGCAGCACATGCTGGCCTGTGTAGCCAGTGTCTGTTGTCCTGCTGGAAGAGCCCTGCCCTCCACAGCTGTGATTATTCTCTGCCTAG
Seq C2 exon
GTTTAATTTTATTGCCAAGAAGCTGTACAAACGGGTGCTACAGCTTGGGGGCAACCCGCTGCTGCCAGTTGCATTGGGAGATGACCAGCACGACTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008920:ENSGALT00000014501:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=FE(23.2=100)
A:
NA
C2:
PF0025820=Flavodoxin_1=FE(23.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCTGGCGGTTTCTGTTCC
R:
CAAGTCGTGCTGGTCATCTCC
Band lengths:
194-885
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]