MmuINT0106856 @ mm10
Intron Retention
Gene
ENSMUSG00000006471 | Ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:MGI Symbol;Acc:MGI:1926047]
Coordinates
chr2:25250280-25251818:-
Coord C1 exon
chr2:25251721-25251818
Coord A exon
chr2:25250379-25251720
Coord C2 exon
chr2:25250280-25250378
Length
1342 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
CTTACTGTCTCCACCCACAGGTT
3' ss Score
11.72
Exon sequences
Seq C1 exon
AACTTCTGGAGGTTCATATTCCGGAAGAGCCTGCCGTCCAGCTCCCTCTGTCAAATGGATTTTGCTGTCCTAGGCCTCGGGGATTCCTCATATGCCAA
Seq A exon
GTGAGTAGGGGGTTGACTTGCTGGAGACAGTTATTAAAGTCAAGGAAAAAATGAAGCAGGCAGCTGGCACCCCAGGTGCCCATCCATTGTAGACCATGTGACCCTACACTGTGTTGGCTCATCAACCTTATGCACAGATATTCCCTAATGGTCAGGACTTTGTAAGGACTTGGCATAGAGAAGGGCACCATTGGGGAAGGAACAGGGTGGCAGAGTACCACCATGGAATTCAGGGCATGGTGAGGCTCAGACCAGCTAGCATTACATTACAACATCCAGTCTGTCCCTGTTCCTCACTATGTTCCAAACATAATCTGAAGCATTGCATTGTGTCCCTAAACAAGCAGTGCTGTGAGCTTCGTTTACTTCCTGTGGTGATGATGAGGGATTTCCACTCAGAGGTGCAAGTAGCTATCTAATACCTAAGACCTGTTTTCCACAGGGCCCAGTGTCATCCAGCACTGAGGGCCACTCCACCCCCTAAAAAGTTGTGTTCATTGCAGGGTTCTTGATTACTTTAGATAAAAAGAACAGAAAATGGGGCTGGAGAAGATGGCTCAGAGAGATTGAGAGCACTGACTGCTCTTCCAAAGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGTTCACAACTGTCTGTAGTGAGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTCATGTGAAAATAATTAAAAACAAAACAACAGAAAATGGAAGCTGAGCATGGTGACTCACTCCCTTACCATCCCAGCACTCAGAAAGCTAATAAGGGAGAATTGCCACAAACCTTAGGGTAGGACTGGATCCTACTACATCACAAAGCAGAGAAAATAGGAAAGTGGTGGTGGTGTGACTTGCTCGGCTAGAGGTTTTGCTCACTGGCACTATGGATACACAGAGCAGGTAGGATGGAGTCCAACTATGGATGTGGTTCCCAAGAAGACAAGCTGATGCGAGGACCAGTGAGTCTTTTACAGACCAAAGAGGGGGATCTTCTCCCAGAAAAACATGGTCATCTGCTCTCCACCCCGCCCCACCTCCAACAGCAACTGTGTAGCCCTGGCACAGGGAATCCATGGTCTTGATCACTTCAGAGATATGGGTTGATAAAATGAGACTGTTCTCCATGTGGCAGCTTCTTGAGATCAAGGGACTTACCATTTGTGGTTATAGCTGTTGCTCCAATCTCTCATCCCCTGCATGCTGAAGTCAGTGTGCACCATCTTTGAGAGAGGTCCTGCACTGCCCAAGAAATTGACTGCACTACCGCCCCATACTGTTGGTTAGCCCACACTCTGGGCCTGCCTTACTGTCTCCACCCACAG
Seq C2 exon
GTTCAACTTTGTGGCCAAGAAGCTACATCGTAGGCTGCTGCAGCTAGGAGGCAGTGCGCTTCTGCCCCCATGTCTGGGTGATGACCAGCATGAGCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006471:ENSMUST00000114349:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=FE(27.4=100)
A:
NA
C2:
PF0025820=Flavodoxin_1=FE(23.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCTGGAGGTTCATATTCCGGA
R:
TCATGCTGGTCATCACCCAGA
Band lengths:
190-1532
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types