HsaINT0111731 @ hg38
Intron Retention
Gene
ENSG00000188566 | NDOR1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:HGNC Symbol;Acc:HGNC:29838]
Coordinates
chr9:137212502-137213878:+
Coord C1 exon
chr9:137212502-137212599
Coord A exon
chr9:137212600-137213779
Coord C2 exon
chr9:137213780-137213878
Length
1180 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
CAGCCTCACTGTCTCCACAGGTT
3' ss Score
10.56
Exon sequences
Seq C1 exon
AACTTCTGGAGGTTTATATTCCGGAAGAACCTGCCCTCCACTGCCCTCTGTCAGATGGACTTTGCCGTCCTGGGCCTCGGGGACTCCTCATACGCCAA
Seq A exon
GTGAGTAGGGGATGGGACAGTGGGCGGACGGAACAGTTCTGGGGGTCGAGCAACAGGTGTGCTGGCAGAGGACCGAGACCAGCTTCCAGGGTCGGCCCCTGCGCGCCTCAGGGCCCTCGCAGTGGTACTGGCTTCTCCACAACGCTCCCTGGTGGGCACCCCAGGCTTCACGCTGCGGGGAGGGCACAGAGGGGAGCAGGCAGGGTGGCAAAGGGCTGGGCTCCAGCCACGCTGACGTCACACAGGCCTACCTGGCGCCGGTCCCCACTTTTACAAAAAGGCGTGCTGTGAAGTGTTGACGACTTTGAGCCTGGAGGAGGACCCCGTATGCTCCTGCCACCCCAGAGGCCACCTCTGCCTTTTCTCCTGGGCATTTTCACAGTGCTCCTCTGCACCCTAAGCAAGGAGTGGCATGTTCAGTGTGCAAATGGCATCTTTAGACCCCACAACGGTGAAAACCCCGACTGTCCACGTAGGGCCCAGGTCCGCTGAGCACCGAGCATCAAAAGCCGTTTGCATAGCCAGGTGTCAGTCATTTCAGATGAAAAAGAACGGGAAGATCGGAGACAGCTCCCCCCGGTTCTGCCGGGAGGTTTTGTTCCGTGCGTGACGTAGGTCCGTGCATGACGTTGTTTCCTGCGTGACGTTGTTCTGTGTGGGACACAGTGTTCGTTCAAGAGAGGGAGGGAGGCCGCTGCCGACAGCGTTCCCAGGGAGGAGCGTGACCCAGAGCCAGTCATGCCTCGGAACCAGAGTGAGAAGAGAAACTGACCCCCGGGAAGATGCCTGGCTCTCTCCCCAGCACAGAGTTTCTCAGCTGAGGAGTGACCCACATCTTGGCTGGGGGCCTGGAGGCCTCAGCTGCCTCAAGTCCCTGCCCAGGGATGAGGGCCCATCAGTGGGACGAGGCCGCCTGCTCCCACCCACACAGGCTCATTCTCTGCGAGCAGAGGACCTGCTGCTTGGCACCCTGGCAGCTGCCCTGGTCTCGGCAGCCCCTGGCGTGTGGAGGCCCTGCCCCCTCCTAGGGTGCGGCCAGCGTGGAGTGTGTTTTCCACCCGAGGGAGGCCCTCCCCAGGCTCCACTCTTCGCCCGGGCTCCACTCTCCCGGGTTCCACTCTGCCTGGGCACCACTCTCCGCCCGGGCTCCAGCCCAGGACCAGCCTCACTGTCTCCACAG
Seq C2 exon
GTTCAACTTCGTGGCCAAGAAGCTGCACCGACGGCTACTGCAGCTTGGGGGCAGCGCCCTCCTGCCCGTGTGCCTGGGCGATGACCAGCATGAGCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188566:ENST00000344894:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=FE(23.2=100)
A:
NA
C2:
PF0025820=Flavodoxin_1=FE(23.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCTGGAGGTTTATATTCCGGA
R:
CTCATGCTGGTCATCGCCC
Band lengths:
191-1371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development