RnoINT0099543 @ rn6
Intron Retention
Gene
ENSRNOG00000010616 | Ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:RGD Symbol;Acc:1308479]
Coordinates
chr3:2469688-2471364:-
Coord C1 exon
chr3:2471267-2471364
Coord A exon
chr3:2469787-2471266
Coord C2 exon
chr3:2469688-2469786
Length
1480 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
CTTGCTGTCTCCACCCACAGGTT
3' ss Score
11.91
Exon sequences
Seq C1 exon
AACTTCTGGAGGTTCATATTCCGGAAGAGCCTGCCATCCACCTCCCTCTGTCAAATGGATTTTGCTGTCCTAGGCCTCGGGGATTCCTCATATGCCAA
Seq A exon
GTGAGTAGGCAGCCAGGCCTTGCACTGTGTTAGCTCATCCACCTTATCCACAGATACTCCCTAGTGGGCACACTAATCTCTGTAAGGACTTGGCACAGAGGAGGCCACTATTGGGGAAGGGACAGGGTGACAGAGTATCACCATGGAATTCAGGGCATGGTAAGGCTCAGACCAGCCAGCACTACATTACCCAGTCTGTCCCTGTTCCTCACTGTGCCCCAAACATAGTTTGAAGTATTGATAACTTGAAAAGAGCCCTAAGGTGGACAGCTTGCCTTCAGGTAGCTTGTTAGGCAGGATCCTGGGTTCTCGCTGTCAAGGTTTGTGGATAGTTATGTCCCTAAACAAGCAGTGCTGTTAGCTTTCCTCATTTCCTGGGGTGATAATGAGGGATTTCCACTCAAAGGTGCAAGTAGCTGTCTAGTTTCCTGTTTTCCACAGGCCCAGTGTCATCCAGCACTGAAGGCCACTCCAGCCTCCTAAAAAGTTGTGTGCACAGCAGGGTTCTTGATTGCTTTAGATAAAAAGAACAGAAAATGGCGCTGGAGAGATGGCCCAGAGCCAGTTAAGAGCACTGACTGCGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCTGAAAAAAAAGAACCAAAAAAAAAAAAAAAAAAAAAGAGCACTGACTGCTCTTCTAAAGTCCTGAGTTCAATTCCTAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATCTGATGCCCTCCTCTGGTGTGTCTGAAGACAGCTACAGTATATTCATATAAAATTAATTCATAAAGTAATTTAAAAAACAAAAACAACAGACACCGGAAGCTGAGTATGATAGGTCACTCACTTAAAATCCCATCACTGAGAAAGCTAATATGGGAGGGTTGCCACAAACTCTAGGTGGGACTATATCTTACTAAACCAAGAAGAACAGAAAATAGGAAGGCAGTGCAGCTTTGCTCTGCTAGAGGGTCTGCTCATTGACACTGTGTAAATACACAGAGAAGGTAGGATGGAGTCCAACTATTGATGTGGTTCCCAAATGGACAAGCTGATGCAAGGACCAGCGAGTCTTCTACAGACCAAAGGGGAAGCTCTTACAGAAACACATCCCACACCCACCTCATCCCCAATAGTAACTGTGGAGCCCTGGTCAGGGAATCCAGTCTTGATCTCTTAAGAGCTGTGGGTTAATAAAATGACCCCTCCACATGGCAGCCTGTTGAGATCAAGGGACCCACCATTTGTGGTTATGGCTGTTGCTCTGGTCTCATCCCCTGCATGCTGAAGCCCTGCCCCCTTCTAGAATGCTGCCAGTGTGCACCACTGAGGAAGTGACTCTTGAGGGAGGTCCTATACTCCTTTACTCTGCTCAAGAGGTTGGCTACACTACTGCTCCTTACACTCTGGGCCTGTCTTGCTGTCTCCACCCACAG
Seq C2 exon
GTTCAACTTTGTGGCCAAGAAGCTCCATCGCAGGCTGCTGCAGCTAGGAGGCAATGCCCTCGTGCCTCCGTGTCTGGGTGACGACCAGCATGAGTTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010616:ENSRNOT00000014445:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=FE(23.2=100)
A:
NA
C2:
PF0025820=Flavodoxin_1=FE(23.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGTTCATATTCCGGAAGAGC
R:
CCTAACTCATGCTGGTCGTCAC
Band lengths:
190-1670
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]