DreINT0103035 @ danRer10
Intron Retention
Gene
ENSDARG00000007429 | ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1555]
Coordinates
chr5:31891622-31892003:+
Coord C1 exon
chr5:31891622-31891719
Coord A exon
chr5:31891720-31891904
Coord C2 exon
chr5:31891905-31892003
Length
185 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
AATGTTTGGTCAACTTTTAGGTT
3' ss Score
7.71
Exon sequences
Seq C1 exon
AAATTCTGGAGGTTTCTGTTCAGGAAGTCTTTGCCAGCTGATTCTCTTAGTCGTCTTGACTGTGCTGTGCTGGGTCTTGGAGACTCTTCGTATCCAAA
Seq A exon
GTAAGATGACTGAAACATGCACAGAGCTATCATTTTGCTTTCGTTCACACTTGTATGTTTTTAACATCAGCATCTTAACAGCAATGTATTTGGGGTAAAAGGGGAGATATCTGTAAAACAGAGGACAGGTTTTCTGAATACATATTATTATTGAAACAACACTGAAATGTTTGGTCAACTTTTAG
Seq C2 exon
GTTCAACTTTGTAGCTAAGAAGCTCCACAAGCGTTTGCTTCAGCTTGGTGCAAATATGCTGCTGCCTGTTGGACTGGCTGATGACCAGCATGACCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007429:ENSDART00000033545:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=FE(23.2=100)
A:
NA
C2:
PF0025820=Flavodoxin_1=FE(23.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTGGAGGTTTCTGTTCAGGA
R:
CCAGGTCATGCTGGTCATCAG
Band lengths:
194-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]