BtaINT0103587 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011136 | NR2F6
Description
nuclear receptor subfamily 2, group F, member 6 [Source:HGNC Symbol;Acc:HGNC:7977]
Coordinates
chr7:5781793-5785737:+
Coord C1 exon
chr7:5781793-5782076
Coord A exon
chr7:5782077-5785642
Coord C2 exon
chr7:5785643-5785737
Length
3566 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
TGACCTCTGCATGCCCACAGGTC
3' ss Score
10.31
Exon sequences
Seq C1 exon
ATGGCCATGGTGACCGGCGGCTGGGGCGGCCCCGGGGGCGGCGGCGACACGAATGGCGTGGACAAGGCGGGCGGCTACCCGCGCGCGGCGGAGGAAGATTCGGCCTCACCCCCCGGTGCCGCCAGCGACGCTGAGCCAGGCGACGAGGAGCGGCCGGGGCTGCAGGTGGACTGCGTGGTGTGCGGGGACAAGTCGAGCGGCAAGCACTACGGCGTCTTCACCTGCGAGGGCTGCAAGAGCTTCTTCAAGCGGAGCATCCGCCGCAACCTCAGCTACACCTGCCG
Seq A exon
GTGAGCCCCCTCTCAGCGCACCGCCGCCGGCACCCGGGCCGGGCCTCTGACCTGCTCGGTCACCTTGGGCCTGGCGCTGACCTTCCCTGGTTCTCTACTTCCCGTCAGAGATCGGGGCACAGGTCCCTCGCCCCCTCTCCATCACATTCCTGAGATTGTGTATACAGTCGGCGCTGTATCGGTGCAGGTCCCCCTATCAGGTGGTCCCTGGCGGCTTCCGCCCCAGTTACTCGCTCCTCCTTCCTCCCTTCCTTTTCTCCGGAGAGGGGTCAGCTCTGCGCTGTGAGGGGTTGGGGTGCTGTCAGGGGTGGGTCCCTAATCCCAGGGCATCCCTTCCCTTGGGAATCTCGGCGCGCCGGGGACCGGGTGGGGATCGAACGTGGAACTTGGACTGTGGAGCTCACAGCGTCCGGGGGCCATTGTCTGCGGCCGCGCGGATCGATACGGCGCGCCCTTGGGGTCAAATATCACTTCCAAAGTCGCCCTGACTACTGAGGCGGCGGCTGGAGCGAAACTAGGTGGCACAGGGCGGCTTCCTTCGCATGGGGCGGGGGGAGAGGGACACTTCTGCTGTGGGGGTTGGGCCTGCCCGTCAGGGGGAACCCCCATGGGCGCTCTCTGGGCCCTGGGTCACCGGAAACTGCTGCGAGAGAGGTCCGAGGTGGCGGCTGGATTTGACCGTATCTTGGCTGCTTCAGCCCCGCAACCCCCTCTACACGCCCCCAGCTAGGAGTAGGTGCAGAATTGGGATCCTGGAAAATCCCTGAAACTTTTGTCGGTTCTGAGACTGGGTGGGGATGAATGTTTCCAAGAAGCAGCCCTAGGCTGTCCTAGGTTGGAGTCCCCACTGGCCGGGTGTGACCTGGCTAGCTTTTCTGGTTCCCGACGGGGCATTACGTCTAGGGGAGAAGCTGCTGGCACTGGGTGTCCGGTCCAGGACCCCGCCTTTCACATCACTTTTTGCTGAGTCCCCTTTTCCTCCATTGACAAACCCCTACTCTGCATCCTCCAGGAACATGCTTGGTCTCTGGAGAGCCCGTTTGGAGTGTCCCATTTTCCACATGGGCAAAACTAAGGCCCAGAAAGCTCTTGGCACCTGCCCTGGGTCACCCAGGGAGAGACCTGCCCACTTGGGGCTTAGCAAGAGAACTGTGGGGTTGGGAAGGTGGGGAGCCAGGCAAGTCTGGGTCAGGACCTCCCCAGGGGGAGCTGCTGTTGGAGGGCTTGTTGGCAGGGCTACTGGGTGGGGCCCTGGGTACCTGAAGCAGGAATTTGGCCCCAGATCTGGCCTGTTGGGGGCGGCTCTGTATGGCGCGGAGCTGGCTTACTCCCTCCTCCAATGCTAACTGGGCCACCAGACTTTGGCCTCATTCTTGTTGCTGGAATAACTGTGTGCTCTCTGGCCGGGTCTTTAGGGAGGGCAGGGGAGGGGCTCAGGTGGTTTGGGGGTCCCAGAGGCTTCCTTAGAGTGGGAGCACCAAGGCCAGGGAGAGGGACCTGGTTCGGCACTGGCACGTTCTTGAGAAGGTCTGTGTTGTGTAACCGGGAGAAGTTACTGCTTCTCTCTGAGCCTCAGGTTGAATCAACAAAGACCCCTCGGGGCCTGACGTGGGTGGTTTGATGCCAGTACCCTAGAAAAGACCCCAGTTCCAAGCCCAGCCTTCTCCCAGTTTGAGGGAGATACAGTGAGACACAGGTGTCCCAGTATGTGGTGTCTGGGTTGGGCTAAAGGGAGGGATGGTCTGGGGTCCCAGGAGGAACAAGGAGCTCTGCCTGAGGGTCAGAGAGGAAGGCCACAGGAGGTGGACCTTGAAACATGAGGGGTTTAGCAGGTAGAAGCGAAGGGCACTCCTGCAGAGAGTGTGGCTCCAGCAAACACTCAGTGGCAGGATTGGGGATCAGTGATGTAATGTGAGACCACCCAGGCATGGGAGAAGTTAGAGCCAAGTGGGTCAGAAATTCTGGAGTGAAAGTAATGGGGAACCATGGAAGAAGGTGTGTAAGCAAGAGGGCAATGATCAAATGGGACTGAAAGCCAGAAGCCCAGGGAGAAGGCAGAGTTGGACTGTGGGGTCTGGCAAAGCATGTGCTGTTTAGGTGGGATAACAGGTAGAACTTACTGTTTTCCCATCTGGAGGGGCAGAAGATCTCTCCTGACTCTACAACTGGGGAAGTTGAGGCAGAAGGTTCAGGGCCTCCCCTGAAGTCTCCGGGACCCGAGCCAGGCCCCTGCCTGCCTGCCCCAAGCCTGGCTGTTTCCACCCGGCTGCCCAGGACCCTCCCACTGCCTGCCTGCTGGGCTTTGTTCTGGTTCTGCCTGAGCTCCCTTTGCCCTAGTAGGGCCTCTTCCTGGGGGCTCGGAGGCTGGTGCTGCAGGACACAGAGGCCCTCTGGAGCTTCACCTCTTCAAAATTGGCCACTGGGACTCCCAGGTGGGGCCTGAGTCTTGACACCCCCCCAACCTGCACTCCCAATTTTCTCCAGAATGAGTGCATCCCATATAGAATTGGCCTCTGGCCTCCCAATTCCAGATGAGGAAACCAAGGCTCAGTGGAGGAGTGGCTGCCCAAGGGTCAGGCCTTAGGTGTCCGCAGCTAAGATGTGTTTGACTTTTTAACTTCATTAAGTATTTGTCTTACCTTGTGACTAGCTCTGAGTACCCGATTGGTGCCCAGCTGGGACTCCAGCCCTTGGTTTAGGCCTCAAAAGGCTCAGAGGAGAGAGAGATGGAGGGAACATAGAACAGGGGCCAAGGGAAAAAGGGCGCTGGGGACATTGGAAGAACAAAGGCCTGAACCTTTCAACTTGTGACTGACCTTGGACGGAACTCGTTGCTTCAGAGGGCGGGGCCATGTGTCCTGTCCCTGGAAAAGGCACCAGGAATCCCCGAGGACCCCCTGGAGGAAGTTTCTTGGGCTCAGTTAGGTGTTGGATGGTCTTTCTAGAGAAGGGTTTGACATCTTGGAGGGGTACAGGAGTTCATTCATTCATTCCTTCGTTTGTTCTTACATTGATGGTGGCCTCGTGCCAGGCAGTAATGTTGGGGCCCCATGGTGCTGTGACCCCAAAGAGGACTGGCCTGGGTTCTCATCTCTTAGTCAACTCACAAAGTCTTGCTTGGTGACCATGTTCCTTCTCTGCTCTCACAGTGCCCTGGGACAAAGACCCTGTCCCCTGGCCTGACAAGGACCAAGTAAAATGTAACTGGAAAACTTTTGGGTGTCATTGTCATTCTGCCAGGAACTGCCTCTGGTCACCTGGGGAACTTGTATTCATCCTTCAAAACCCAGTTCCAACATAACCCTCCCTGGCATGCTAATCCACTTTGCCACAGACTGATCTTCATCTGTCTCCACTCCCCCAGATTGTCCTTTCCTCTTTGCACACCTGCAGGCTTAACCTTTGTGCCACTTTGGGGTCATCTGCCCAGCCCAGGTTGTTGGTAGGGATGGGGGTTGGTCCTGATGGTTCCCAGGTGCAACCTTCTAAGACGTCTCACAAAGTGGCTCCCAGGCCAGAATGTAGGTGTCATGGTGACTCCCTTGGTGACCTCTGCATGCCCACAG
Seq C2 exon
GTCTAACCGTGACTGCCAGATCGACCAGCATCACCGGAACCAGTGCCAATACTGCCGCCTCAAGAAGTGCTTCCGGGTGGGCATGAGGAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011136:ENSBTAT00000014791:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.526 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PU(55.7=41.1)
A:
NA
C2:
PF0010513=zf-C4=PD(42.9=90.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]