HsaINT0115623 @ hg38
Intron Retention
Gene
ENSG00000160113 | NR2F6
Description
nuclear receptor subfamily 2 group F member 6 [Source:HGNC Symbol;Acc:HGNC:7977]
Coordinates
chr19:17240671-17245940:-
Coord C1 exon
chr19:17244943-17245940
Coord A exon
chr19:17240766-17244942
Coord C2 exon
chr19:17240671-17240765
Length
4177 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
TGGCTTCTGTGTGCCCCCAGGTC
3' ss Score
12.33
Exon sequences
Seq C1 exon
GCGAATGGAACGCTGTGTGTCAAACCGGCCGCAGCGCGAGGCCGGCGCGCGGGGTCGGTGGCGGTGGCGGCGGCGAGAGCGAGGCTTGGGCCCAGGCGCAGGCCCAGGCCAGGCAGGAGCGGCCGCAGCGGGGGCGGCAGCTCCAGAGGCGCCGGCCCAGCGGCCCTGCAGGCCCGGAGCGGCAGCCGCGGGCGCCGGGGGACCCAGGGGGCGCGGCGATCAGCCCCGGCGCGCACCCGCCGCCCCTCCCCCCCCGCCACGGGCGGCCGCGCAACTTGCGGCCAAACTTTCCCCCCGGCCTCCCGCGCTCGGATGGCGGCCCGCTGAGTTGGCCGCAGCCCCCGGGCGAGCGGCGGCCAGGCCAGAGGACGCCCCCTGCGCGGCTCGGGCCGGGCCATGGCCCGCGCGCCCCCGCCGGGGCCCCAGGGCGGCGGGACGCGAGTCCTCTGGGCCCCCGGCCCGCGCCTCTAGCGTGCCCCTCCCGGCCCCGGGCCCGGCCCCGCGCACGCGTGGGAAAGTTGGCCTGGAACCGGCCCGACCAGTTCCGCCCGGGCGCGAGGACCGGCCGCAGGAAGTTGCTGCAAAACTTTTTTGGGGGGTGCAGCCCGTGCCCCCCGCGCGCCGGGGCCGAATGCGCGCCGCGTAGGGTCCCCCGGGCCGAGAGGGGTGCCCGGAGGGAAGAGCGCGGTGGGGGCGCCCCGGCCCCGCTGCCCTGGGGCTATGGCCATGGTGACCGGCGGCTGGGGCGGCCCCGGCGGCGACACGAACGGCGTGGACAAGGCGGGCGGCTACCCGCGCGCGGCCGAGGACGACTCGGCCTCGCCCCCCGGTGCCGCCAGCGACGCCGAGCCGGGCGACGAGGAGCGGCCGGGGCTGCAGGTGGACTGCGTGGTGTGCGGGGACAAGTCGAGCGGCAAGCATTACGGTGTCTTCACCTGCGAGGGCTGCAAGAGCTTTTTCAAGCGAAGCATCCGCCGCAACCTCAGCTACACCTGCCG
Seq A exon
GTGAGCCCCCCATCCGCGCGCCGCCGCCGTGCACCCCGCCCCGACCTGGGGCAGGCCTCTGACCTGCTCGGTCACCTTGGGCCTGGCGCTGACCTTCCCTGGGCCTCCACTGCCCCCTCTGAGATAGGGGCACAGCACCCTCCTCCCGCATTCCATGGCTGGGATTGTGTATACAGTCGGCGCTACATCGTTGCAGGTTCCCCCCCCATCAGGTGGTCCCTGGAGGCTTTTGCCCCAGTTACTTGCTTCTCCTTCCCTCCGCTTTTTCTCTGGGGAGGGGTCATCTCCGCGCTGGGGTGGGGGTAGGGGTGCTGTCAGGGGTGGTAACCCAACCCCAGGGCACCCGTTCTCGGGGATCCCGGCGCGCGGGATGCCCTCGAGGGAATCGAACGTGGAACTTGGACCGTGGAGCTCGCAGCGTCCAGGGGCCATTGTCTGCGGCCGCGCGGATCGATACGGCGCGCCCTTGGGGTCAAATATCACTTCCAAAGTCGCTGTGGCTACGGAGGCGGCAGACGGAGGGAGGCTGGGGTGGCACGGGGCGGCCTTCTTCGCATGAGGGGCCCAGCGGTGGGGGTGGGGGTGGGAGCTGGGCTTGCCCATCTCAGGGAACCCCTCTGGGCTCACTCTGGGCCTTGGGTCACCGGAAATCGCCACTGGAAGGCCGGCAGGGCCACCGGAATTGACTGAAACGTCCCTCTCCCCCAGGGGTGGGTGCAGACCTGGGGCTCCTGGAAAAATCCCTCAAACTTTGGGTGTCTCTGAGACGGGCAGGGAGTGAAACGTTTCCGAGCAGGAGCCTTGGGCTGTCCCAGGTCGGAGACCTCTCTGGCAGGGCGTGGCCTTGCTAGCTGTTCTGGCGGAAGGTCCCCAGGGAAAGCGATCGGGGTTGTCCAGCCCGGGAGTTCTTTTCTCACCGTTCCCGGGCGAGCATCCGATCTGTCCGTTTATAAGCCCCTACTCTGCACCCCAGGAACATGCAGGGTCTCTGTGGAGCCCGTCTAGACGGTCTCAGTTCCCAGCTGCCCAAAACAGAGGCCCAAAGGCCCAGAGAGAGGTCCTGGTGCCTGCTTTGCGTTGGACATGGAGGGACGCTGCCCGAGTTGGGGGCACTGTGGGGGAACTGTGGGGCTAGGGTGGGGACCGCTGAGTTCGGATCGGAGTGGCCCCAGGGAGAACGGCTGATGGAAGGCTTGTTGGCTGAGGCCACCAAATAGGGCCCCAGGTACCCGAGGGTGGAGTTTGGCCCCAGGTCCCGGGTCAGGGCTGGCCTGGTGTGGCCATGTGTGGCAGAGCTGCCTTGCTCCCTCCTCCAGCACAAAGTGGGCCACTAGACTTTGGCCTCATTCTTGCTGCTGGAAAACCGCCTGCTCTCTGGTCATATCTTTAGGGAGGGTAAGGGAGGGGGGCTCAGGCAGTTTTGGGGTCCCAGGAGCTTCCTGAGGGTGGTGTCAGGGAGCAGCAATTTTGGGTGGGGGGGGCCTTGCTTGGAGCTGACAGGTTTGTGCTGTGTCAGTTGTGTGACCTGGTGAAATCACCATTCCATTCTGAGCTTCAAATGGATTGAGCAGGGTCTCGCTGGGGCCCAGCCTGGGTAGTTTGATGCCAGCCCCTCCAGAGAGACCCCAGCTCCAAGTCTAGCTCCTGAGAAGCCCCCAGTCTGGAGGAGACACAGTGAGACAGATGCCCCAAGTCTGTGGGATCTGGGGTCCCAGGGAGAGAGCAGAGGCTCTGCCTGGAGGTCAGAGAGGGCTGCCTGGAGGAGGCTAGGGGACATGAGCCTTGAAGCATGGAGTTGGCAGGTGGAAGAAAGGCCACAGGGACATGCCAGAATGTGGTCCAGACAAAACACTTAGTGGCAGACTGGGGGAGCTGTGCTGTAAGAGGGGGACTGTGCAGCCATGGGAGAAGTCAGAGCTAGGTGGGCCTGAAATGCTGGCTGAGGGTAATGGGGAGCCATAGAGGGTGTGTGAGCAGGAGAGGGCTCTGATCAAATTGGACTGGAGGCCAGAAGCCCAGGGAGGAAGCTGAGTTGGGCCATGGGGTTGGGCAAAAAAGCTTGCACTCTTTAGGTGGGATAACAGGAAGAACTTAACTGTTTCCCTCCTTGGAGGGATGGATCTGTCCCAATTCCACAGCTGGGGAAGTTGAGACTGAAGGTTCAGGGCCTCCCCTGAGGTCAGGGGCCCCTGAGCTGGGCCTCTGCCTGCCTGCAGGGCCGCCCCAGGCCAGGCCGTTTCCACCCGGCTGCCCTGGACCCTCCCACCACCCAGCCGCTGGGCTTTGTTCTGGTTCTGCCTGAGCTCCCTCTGCCCTAGTGGGGCCTCTTCCCAGGGGCTCAGTGGCTGGTGCTGCAGGACCCAGGCAGTGGTGGAGGGGGGGTACGGGGGAGTGGGCGCAGATCCTCAGCTTTCCTAAGTTGGGTTCTCCGGCTGGGCTCTGGGTCTTGGCACTGTCCCCCGTGAACCCCTCTGACCCAGTCCATCCCATATGATAGGGCAATATCTGACCTCCCATTTTCAGATGAGGAAACCGAGGCTCAGTGGGGCAGTCGCCACCTGAGGGGCAGGGCTGGGTATCTGCAGCTGAGATTCATCTGTTTTGTTTTGTTTTGTTTTGTTTTTGAGACGGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCGATGGCGTGATCTCAACTCACTGCAACCTCTGCCTCCCGGGTTCAAGCGGTTCTCCTGCCTCAGCCTCCCAAATAGCTGGGATTACAGGCATGCGCCACCATGCCCGGCTAATTTTGTATTTTTAGTAGAGACAGGTTTTCTCTATGTTGTTCAGGCTGGTCTCAAACTCCCAACCTCAGGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCACCCAGCCTTTTTTTTTTTCTTTTTTTTTGAGACAGAGTCTCACTCTGTCACCCTGGCTGGAATGCAGTGGGTCAATCTTGGCTCACTGCAACCTCCACCTCCCCAGTTCAAGCGATTCTCCTTCCTCAGCCTGCCAAGTAGCTGGGATTACAGGCATGCGCCACCACGCCCAGCTCATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTGACCTCAGGTGATCCACCCTCCCCCGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCAGAGATGCATCTGTTTAATTCCCTTAAGTGGTGGTTCTACTCTGTGACTGTCTCTGTGTGTCCCCTGGGTGTCCAGCTGGAACCCCAGGGGTAGTTGCTCCAGGCCCAGGCCTTGGAGAGCCCCCAGCTCCTGGTGGCAAGAGACCAGGGGAGTCCAAGGGCAGGGGCCAAGGGGAGAAGGTTCTGGGGACATTTGAAGAATAAGGCCTGGACCTTCCTGCTTGGGGGCTGACCCAGGATGGGGAGCTCACCACCTCTCAGGGTGGGGCCACCTGTCTCATCCCTGCAAGAGGCAACGGCATTCACTGAGGGCTGACCAGGAAAATCTCCAGCTTGCATAGGGGTTGGGTGGTCCTCTCGGAAGAGCGTAGGTGTGGGGCCTTCAGGGCTGAGGACCAGAGTGACTTTGTTTACTTCCTCATTCCTTGGGGTGGGCATTGTGCGGGTGATAATGCTGGGGCCCCACAATGCTATGACCCCACAGACCACTAGCCCCTGGCCTGACCCCTAGTTAATTCACAAAGTCCAGCTCTCTGACCATGTCCTCTTTGCCTTCACATCTTTTTGGGGACAATGACCCTGCTCAGCCTGACAGTGACCAAATAAAATGAAACTCTTTAGGCCTCCATATTTGTGTATTTCAACCCTTTTGCTCTGGCTGTACCCTCTCTCTGGGATCACCCCGCCATTCACCTGGAGAACTCCTATTCATCCTTCAAAACCCATGCCAATGTGCCCTCCCTGGGGTGTTCATCTGCTTTTCCACAGATTCCTCTTCATCCATCACCACTCATCCGGGTTATCCTGTCTGGTTTGCAGACCTGCAAGCTGAGCTCCTGTACCCCTTTGGGGCTACCTCTCCAGTCTAGAGGGCCCCTACTAGTATTTCTGAGGGGCAGCCTCCAAAGGCGGCTCATAGGCTGGTTCGGGGAGGAGGATATGGGGGTCTCAGGGAGCCCTGGCTTCTGTGTGCCCCCAG
Seq C2 exon
GTCCAACCGTGACTGCCAGATCGACCAGCACCACCGGAACCAGTGCCAGTACTGCCGTCTCAAGAAGTGCTTCCGGGTGGGCATGAGGAAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160113:ENST00000291442:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.516 A=NA C2=0.079
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PU(55.7=41.9)
A:
NA
C2:
PF0010513=zf-C4=PD(42.9=90.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development