MmuINT0110519 @ mm10
Intron Retention
Gene
ENSMUSG00000002393 | Nr2f6
Description
nuclear receptor subfamily 2, group F, member 6 [Source:MGI Symbol;Acc:MGI:1352453]
Coordinates
chr8:71378389-71381960:-
Coord C1 exon
chr8:71380991-71381960
Coord A exon
chr8:71378484-71380990
Coord C2 exon
chr8:71378389-71378483
Length
2507 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
ACCCTGGCCTGTGTCTCCAGGTC
3' ss Score
10.16
Exon sequences
Seq C1 exon
CCCCCGCCGGCGCCGATGGAACGCGGGTGTCAGGCCGGCCGCAGCGCGGGGCCGGCGGCGAGCGCCAGGGCGAGGCCGAGGCTCGGGCCCAGGCGCAGGCCGAGGCCGGCCGCGCGAGCGCTCGGCGGGGAGACGATCCAGGGAAGGCCGCGGGTCGCACTCTCCACTCAGCTCTATCGCCTGGACCTCTGCGATTACGGCCGGGCGCGCGCGGCGTGCGGGACTCCGGGTCTCCGACGCGCGCTCCCGCCGCCCCTCCCCCCTCGCCGCGTAACTTGCGGCCAAAGTTTCCCCCCGGGCTCGGGGGCGCCCGCGCGCGCTCGGATGGTGAGCCACTAAGTTGGCCTGGGCGGCGGGGCCGGGCCATGGCCCCCGCGACGCTACCGGGTCCCCAGGACTCCGGACCACGGGACCTGGGCGCCCCAGACTCGCGCCTCTAGCGCGCCCCCGTCGACCGCGGGCACGCGTGGGAAAGTTGGCCTGGAACCGGCCCGACCAGTTCCTGCCTGGCGCGCGGACCGGCCGCAGGAAGTTGCCGCAAAACTTTTTTCAGGGGGGTGTGCGACCGGAGCCCCCCGAGAGCGCGGGCTGCATGCGCCCGGGGTAGCCGGGTCCCTCTCGGGTCGCCAGGCGTGCCCAGAGGGGACGGACTCGTCCCGGGGCGTACCGGCCCCGCTGTCTCCGGGGCTATGGCCATGGTGACCGGTGGCTGGGGCGACCCCGGAGGCGACACGAACGGCGTGGACAAGGCTGGTGGGAGCTACCCACGCGCGACCGAGGACGATTCGGCGTCACCTCCCGGGGCGACCAGCGACGCGGAGCCGGGCGACGAGGAGCGTCCGGGGTTGCAGGTGGACTGCGTGGTGTGCGGGGACAAGTCCAGTGGAAAGCATTACGGCGTGTTCACCTGCGAGGGCTGCAAGAGTTTCTTCAAGCGCAGCATCCGCCGCAATCTCAGCTACACCTGCCG
Seq A exon
GTGAGCCCCACGCGCGGCCACCGAGCTGGCCCGGACCTGCTCGGTCACCTTGGGCCTGGCGCTGACCTTCCCCACACCCGCATTCCTGCCCCAGACCACGGGTTCGGCCCTAGTGGAGTTGGTGATACATGCGTGCAGGTGCTCCCCCTCTCCTCCCCCGCGCAGGTGGTCTTTGCTCTTGTCCTCCTGCTCTGGAGAGAGCTGGTTCTGCTAGACAGGGAGGGCTCGGGAGTGCTGTCAGGAGTGAGGACCCTCTTTCCAGCCCCCAGTGCCCCCTTTCTCGTGGGGGCCCGTCACGCGTGGTGCCTCGCGGGAATCAGAGGTGCAAGTCGCACCGCGGGGCTGGCGGCGTCCAGGGGCCATTGTCTGCGGCCGCGCGGATCGATCCGGCGCGCCCTTGGGTCAAATATCACTTCCAAAGTCGCCCTTGCATGGGTAGCTGGAGAGACTCCCGGGTGGGTGTCTCGGAATGGCTGCCTTCACGGGAATCGGGGGACTGCATGCACGAGGGTCTGTGCCTGTCCATCAGAGGGGTACCCCTTAGGTTCTGGGTCACCGGAAGCCGCCGCTGGAGGGCCAGCAAGGCCACCGGAATTGACCGCACCCCCACTCCCGGGTTGGTTCAGCTTTGGGGCTCCGGGATGAGACCTTAAACTTCGGGACGACTCTTAAGAGTGAAGTACCCGTGGGAGATGCCGTCTGGTGGGGACCCCTCTACAGGGCCATGCAGGGCGTGGTCTTGCTTACTGGCTGCCTTAGGGGACAGAAAGCCCCTCGAAAAAGAGGTTGGCTGTCCAGGCCAGGGGTTGTAGAGCACTTTCTATCCATGCATGCAGCAGACTTTGCATTCCCCAGGATCGTGCAGGGCCTCAGAACAGGGCAGGCAGCCCCGTTTCCCAGGTGCCTGGAGCCCCAGAGAAGTTGTAGAGTTATGGGAAGGGTCCTGGCCCAGTGGACTTAAGCAGGTAGAGCTGTGGGGGCTGGATGTGGAGATGAGTTCCTTCCCAGAGGCAGATGCTACTGACAGGTCAGGTGGGGGCCACCCCCATGTTAGAGTTTGGACTTGTTGGGGACCTGCCTTGCTCCCCTCCTCCACCTGTAACTGGGCCACCAGACTTTGGCCTCATTCTTGTGTCTGGAATGAGTTGCTGGGTCTGGCTGGGTCTTTGGGGAGAGTGAAGGGGACTGGGGCGGGCTCTCTAGGATCCTCAGGACCTATGGTGTGGGGCCTCGTGTGGTTGGTCTCCCTCTCTGAACCTAAGTGGACTAGCAGCTGTCTGGAGCTGGGAGGGCTTCAGGAAGTGGCCTCAAAGCCCTGGGGTAGGGCAGGCAGAGGAGGACCCTCCCCCCATGATGCTTAGTGGGCTGTGTTGTCAGGTGAGCCCATCCGGGCACAGCAGAGGCATGTGGGCATGAAGTGCTGGGTTGAGGGCAGCAGGGAGCCATGGACAGTGTGTGAGCATGGTATGGTCACATTGGATTGGGAAGCTGGTCACTGTTACAGCCCCAGCTACTCAGAACACAGCCTGGACAGCATAGCAAGGGGGCAGTGTCCACCCCATCCCCAAACAGAGATAGAGATAGCCATTGTGATGAGCATAGCACAACAGGCAAAGCATATATCACTTTAGGTGAGATAGCCAGAAGAACTTACAGGTTTATGGGTTTTAATCTGTCCCAACCACACAGTGGAGACGTCAAAGCCTTCCCTGAGCAGAGCCCACCCGCTTAGGGCCTGGCCAGTTCCGCCTGGCCGCCCTGATCCCCCATCACTGCTTGGCTGCTGGCTTTGTTCTGGCTTTGCCTGAGTTCTCTCTGTCCCAGCTGGGCCCCTTCCTGGGGGCCTCTAAAAGTCAATAGGGTCTGGGCTCTCCTAACTCTGCCCAGAGCACCCTGGCTGGGACAGGAGCTGTCCTGGAGCCCACAGAACCTCTCAGCTCAATGGCTGCTGCATGGGGCAGCAGCCAGAGGGTGATATAGGAACAGGCTGGGAGGAGAGGCCAGCGCCTAGAGCTTGATTTCTGCCTCTTATTTCTACTCCAGGTCTGGAGGCTTTTTGGTGCCCAAATTGGGTACTCCTCGTGGGCTGTCCACAGAAAGAGTCTTGGGCTTATGGAGACATGGGTATGGGGCTGGTGTTCTCAGAGGAGAAAAGTTCTGTTCGTTGCTTCTCACCATAGGCTGTGAGGTTGAGCCAGCGCAGTACTGTGACTCCATGCATAGCTGGTACTTGGCCTGGTGGTGACCAAGTAAGATGAACAGGATTCGGTTTCCATCCTTTGCGTTTCAAGTCTGTTCCATTGTGTCCTCTACCAGGAAATGCTTTTCCATCTGCCCCCTTGGGGAACTTCTGTGCATCCCATTCTGATCAGATTGCTCCTTCCAAGCTAGGGAACTGAGTCCTCACCATGTACTCTTGGGGCTCCCATCACAGGTCAGGGATCCCCCACTGGTATTTCCCAGGGGTTTGCAGGCACATCAGTGGGAACCCTGGCCTGTGTCTCCAG
Seq C2 exon
GTCCAACCGTGACTGTCAGATTGATCAGCACCACCGGAACCAGTGTCAGTACTGTCGGCTCAAGAAGTGCTTCCGGGTGGGCATGCGCAAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002393:ENSMUST00000002466:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.492 A=NA C2=0.067
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PU(55.7=41.5)
A:
NA
C2:
PF0010513=zf-C4=PD(42.9=90.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types