RnoINT0102977 @ rn6
Intron Retention
Gene
ENSRNOG00000016892 | Nr2f6
Description
nuclear receptor subfamily 2, group F, member 6 [Source:RGD Symbol;Acc:621685]
Coordinates
chr16:19774330-19777414:-
Coord C1 exon
chr16:19776922-19777414
Coord A exon
chr16:19774425-19776921
Coord C2 exon
chr16:19774330-19774424
Length
2497 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
ACCCTGGCCTGTGTCTCCAGGTC
3' ss Score
10.16
Exon sequences
Seq C1 exon
GTTGGCCTGGAACCGGCCCGACCAGTTCCTGCCTGGCGCGCGGACCGGCCGCAGGAAGTTGCCGCAAAACTTTTTTTGGGGGGGTGCGACCGGAGCCCCCGAGCGCGCGGGCTGCATGCGCCCGGGATAGCCGGGTTCCCCTCGGGTCGCCAGGCGTGCCCAGAGGGGACGGACTCGTCCCGGGGCGCCCCGGCCCCGCTGTCCCCGGGGCTATGGCCATGGTGACCGGTGGCTGGGGCGGCCCCGGAGGCGACACGAACGGCGTGGACAAGGCAGGTGGGAGCTACCCACGCGCGACCGAGGACGACTCGGCCTCGCCTCCCGGGGCGACTAGCGACGCGGAGCCGGGTGACGAGGAGCGTCCGGGGCTGCAGGTGGACTGCGTGGTGTGCGGGGACAAGTCCAGCGGCAAGCACTACGGCGTGTTCACCTGCGAGGGCTGCAAGAGTTTCTTCAAGCGCAGCATCCGCCGCAATCTCAGCTACACCTGCCG
Seq A exon
GTGAGCTCCACGCGCGGCCACCGTGCCGGCCCGGACCTACTCGGTCACCTTGGGCCTGGCGCTGACCTTCCCCGCACCCGCATTCCCGCTCCAGGCCACAAGCTCGGCCTCAGTCCTGATCCGGTATACAGTTGGCGATGCATGAGTGCAGGTGCCCCCACCCCCGCAGGTGGTCTTGCTCTTGTCCTCCTGCTCAGGAGAGAGCTGGTTCTGTTAGGCGGGGAGGGCTCGGGGGTGCTGTCAGGAATGGGGACCCTCCTTCCAGCCTCCAGAGCCCCCTTTCTCGTGGGAGCCCGTCACGCGTGGTGCCCCGCGGGAATCAGACGTGCAAGTCGCACCGCGGGGCTGGCGGCGTCCAGGGGCCATTGTCTGCGGCCGCGCGGATCGATCCGGCGCGCCCTTGGGTCAAATATCACTTCCAAAGTCGCCCTGGCATGGGCAGCTGGAGGGACTCCCGGTGGGTGGCTCGGGATAGCTGCCTTCGCCGGAAGCGGGGGGCTGCATGCACGAGGGTCTGTGCCTGTCCATCAGAGGGGTACCCCTTAGGCTCTGGGTCACCGGAAGCTGCCGCCGGAGGGCCAGCAAGGCCACCGGAATTGACCGCACCCCCCACTCCTCGGTTGGTTCAGCCTTGGGGCTCCGGGATGAGTCCTTAAACTTTTCGGGGCTATTCTAATGAGTGAAGGGCCGTCTGCTGGGGACCCCTCTGCAGGGCTGTGCAGGGCGTGGTCTTGCCTACTGGCTGCCTCCGGGGACCGAAAGCCCCTTGAAAAACAGGTTAACTGTCCAGGTTAGGGGTTGTAGAGCACTTTCTATCTACGCATGCAAATGCTGGGCTCTGCATCCCCCCTACCCCCGAGCGTGCAGGGCCTCAGAACAACGCAGGCAGCCCGGTTTCCCAGTTACTCAGAGCTCCAGAGAAGTTGTAGGGTCATGAGAAGGGTCCTGTCCCACTGGACTTATCAGGTGGGGCTGTGGGTGCTGGTGAGGGGCTGGGTGTGGAGTTGGATCCCCTCCCAGAGGTAGATGCTAGTGGCAGGTCAGGTGGGGTCCACCATGTTAGAGTTTGGACTTGGTGGGACCTGCCTTGCTCCCCTCCTCCAGCTGTAACTGGGCCACCAGACTTTGGCCTCATTCTTGCGTCTGGAATGAGTTGCTGGGTCTGGCTGGGTCTTTGGGGAGAGTGAAGGGGACTGGGGCAGGCTCAGGGTCCTACCTGCTCTCTGGGTTCCTCAGGACCTATGCTGTGAGATCTCTTGTGGTTGGTCTCCCTCTCTGAACCTTAGTGGACCAGCAGCTATCTGGGGTTGGGGGGCACTTCAGGAAGTGGCCTCAAAGCCCTGGGGTAGGGGAGGCAGAGGAGGAACCCTCCCCCCACGCTGTCAGGTGAGCCCACCCAGGCACAGCAGAGGCACACGGCATGAAGTGCTGGGTTGAGGGTAGCAGGAGCCGTGGGCAGTGTGTGAGCATGGTATGGTCACATTGGATTGGGAAGCTAGCCACTGTGAGTTACACACAGTCCCAGCTACTCAGAAGGCTGAGGGTAGCCTGGGCAGCCTAGTGAGGGGACAGTGCCCACTACCCCCATCCCCAAACACAGAAATGGGAACAGCCATTGTAAGGAGCATAGCACAGAAGAACTTAGAGTTTTATAGGTTTTAGTCTGTCCTAACCACACAGTGGAGATGGCAAAACCTTCCCTGAGCAGAGCCCGCCCGCCCGCCTAGGGTCTGGCCAGTTCCGCCTGGCCGCCCTGATCCCCATCACCGCTTGGCTGCTGGCTTTGTTCTGGCTTAGCTTGAGTTCTCTCTGCCCTAGCTGGGCCCCTTCCTGGGGGCCTCTAAAAGTCACAGGGGCTGGAGCTGTCCTGGAGCCCCCAGGACCTCTCAGCTCAGTGGCTCTTTATGGGGCAGCAGCCCAAGGGTGATACGGGAGCAGGCTGGGAGGAGAGGCCAGCACCTAGAGCTTGATTTCCACCTCTCATCTCCGTGTCTGGGTGCTTTTTGGCACCCAGATTGGACACTCTTCGAGGGCTGTCCAGAGGAAGAGTCTTGGGCTTATGGAGACATGGGTGTCAGGCTGGTGTTCTCAGGAGAAAGGTGCTGTCTGTTCCTTCTCACCGTAGGCTGTACGGTTGAACCAGCGCAGTACTGTAACTCCATTCATGGTTGGCACTTGGCATGATGGTGACCGAGTAAAAGGAATAGGATTCGGTTTCCATCCTTTTGTGTTTCAAACTGGTTCCATTGTATCCTCTGCCAGAAAATGCTTTTCCATCTGCCCCCTCGGGGAACTTCTGCGCATCCTTTAAAACCCATTCTAAAGGGCTCCCCTTGTGTGCTGTCCTTCACCCATTATGATCAGATTGCCCCTTCCGAGTTGGGGAACTGAGTTCCTATAGTGCTTTTGGGGTTACCATCCCAGGCCAGGGAGCCCCCACTGGTGTTTCACAGGGGTTTGCAGGCACATCACTGGGAACCCTGGCCTGTGTCTCCAG
Seq C2 exon
GTCCAACCGTGACTGTCAGATTGATCAGCATCACCGGAACCAGTGTCAGTACTGTCGCCTCAAGAAGTGCTTCCGGGTGGGCATGCGCAAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016892:ENSRNOT00000022898:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.521 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PU(55.7=41.5)
A:
NA
C2:
PF0010513=zf-C4=PD(42.9=90.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]