HsaINT0115623 @ hg19
Intron Retention
Gene
ENSG00000160113 | NR2F6
Description
nuclear receptor subfamily 2, group F, member 6 [Source:HGNC Symbol;Acc:7977]
Coordinates
chr19:17351480-17356151:-
Coord C1 exon
chr19:17355752-17356151
Coord A exon
chr19:17351575-17355751
Coord C2 exon
chr19:17351480-17351574
Length
4177 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
TGGCTTCTGTGTGCCCCCAGGTC
3' ss Score
12.33
Exon sequences
Seq C1 exon
GTGCAGCCCGTGCCCCCCGCGCGCCGGGGCCGAATGCGCGCCGCGTAGGGTCCCCCGGGCCGAGAGGGGTGCCCGGAGGGAAGAGCGCGGTGGGGGCGCCCCGGCCCCGCTGCCCTGGGGCTATGGCCATGGTGACCGGCGGCTGGGGCGGCCCCGGCGGCGACACGAACGGCGTGGACAAGGCGGGCGGCTACCCGCGCGCGGCCGAGGACGACTCGGCCTCGCCCCCCGGTGCCGCCAGCGACGCCGAGCCGGGCGACGAGGAGCGGCCGGGGCTGCAGGTGGACTGCGTGGTGTGCGGGGACAAGTCGAGCGGCAAGCATTACGGTGTCTTCACCTGCGAGGGCTGCAAGAGCTTTTTCAAGCGAAGCATCCGCCGCAACCTCAGCTACACCTGCCG
Seq A exon
GTGAGCCCCCCATCCGCGCGCCGCCGCCGTGCACCCCGCCCCGACCTGGGGCAGGCCTCTGACCTGCTCGGTCACCTTGGGCCTGGCGCTGACCTTCCCTGGGCCTCCACTGCCCCCTCTGAGATAGGGGCACAGCACCCTCCTCCCGCATTCCATGGCTGGGATTGTGTATACAGTCGGCGCTACATCGTTGCAGGTTCCCCCCCCATCAGGTGGTCCCTGGAGGCTTTTGCCCCAGTTACTTGCTTCTCCTTCCCTCCGCTTTTTCTCTGGGGAGGGGTCATCTCCGCGCTGGGGTGGGGGTAGGGGTGCTGTCAGGGGTGGTAACCCAACCCCAGGGCACCCGTTCTCGGGGATCCCGGCGCGCGGGATGCCCTCGAGGGAATCGAACGTGGAACTTGGACCGTGGAGCTCGCAGCGTCCAGGGGCCATTGTCTGCGGCCGCGCGGATCGATACGGCGCGCCCTTGGGGTCAAATATCACTTCCAAAGTCGCTGTGGCTACGGAGGCGGCAGACGGAGGGAGGCTGGGGTGGCACGGGGCGGCCTTCTTCGCATGAGGGGCCCAGCGGTGGGGGTGGGGGTGGGAGCTGGGCTTGCCCATCTCAGGGAACCCCTCTGGGCTCACTCTGGGCCTTGGGTCACCGGAAATCGCCACTGGAAGGCCGGCAGGGCCACCGGAATTGACTGAAACGTCCCTCTCCCCCAGGGGTGGGTGCAGACCTGGGGCTCCTGGAAAAATCCCTCAAACTTTGGGTGTCTCTGAGACGGGCAGGGAGTGAAACGTTTCCGAGCAGGAGCCTTGGGCTGTCCCAGGTCGGAGACCTCTCTGGCAGGGCGTGGCCTTGCTAGCTGTTCTGGCGGAAGGTCCCCAGGGAAAGCGATCGGGGTTGTCCAGCCCGGGAGTTCTTTTCTCACCGTTCCCGGGCGAGCATCCGATCTGTCCGTTTATAAGCCCCTACTCTGCACCCCAGGAACATGCAGGGTCTCTGTGGAGCCCGTCTAGACGGTCTCAGTTCCCAGCTGCCCAAAACAGAGGCCCAAAGGCCCAGAGAGAGGTCCTGGTGCCTGCTTTGCGTTGGACATGGAGGGACGCTGCCCGAGTTGGGGGCACTGTGGGGGAACTGTGGGGCTAGGGTGGGGACCGCTGAGTTCGGATCGGAGTGGCCCCAGGGAGAACGGCTGATGGAAGGCTTGTTGGCTGAGGCCACCAAATAGGGCCCCAGGTACCCGAGGGTGGAGTTTGGCCCCAGGTCCCGGGTCAGGGCTGGCCTGGTGTGGCCATGTGTGGCAGAGCTGCCTTGCTCCCTCCTCCAGCACAAAGTGGGCCACTAGACTTTGGCCTCATTCTTGCTGCTGGAAAACCGCCTGCTCTCTGGTCATATCTTTAGGGAGGGTAAGGGAGGGGGGCTCAGGCAGTTTTGGGGTCCCAGGAGCTTCCTGAGGGTGGTGTCAGGGAGCAGCAATTTTGGGTGGGGGGGGCCTTGCTTGGAGCTGACAGGTTTGTGCTGTGTCAGTTGTGTGACCTGGTGAAATCACCATTCCATTCTGAGCTTCAAATGGATTGAGCAGGGTCTCGCTGGGGCCCAGCCTGGGTAGTTTGATGCCAGCCCCTCCAGAGAGACCCCAGCTCCAAGTCTAGCTCCTGAGAAGCCCCCAGTCTGGAGGAGACACAGTGAGACAGATGCCCCAAGTCTGTGGGATCTGGGGTCCCAGGGAGAGAGCAGAGGCTCTGCCTGGAGGTCAGAGAGGGCTGCCTGGAGGAGGCTAGGGGACATGAGCCTTGAAGCATGGAGTTGGCAGGTGGAAGAAAGGCCACAGGGACATGCCAGAATGTGGTCCAGACAAAACACTTAGTGGCAGACTGGGGGAGCTGTGCTGTAAGAGGGGGACTGTGCAGCCATGGGAGAAGTCAGAGCTAGGTGGGCCTGAAATGCTGGCTGAGGGTAATGGGGAGCCATAGAGGGTGTGTGAGCAGGAGAGGGCTCTGATCAAATTGGACTGGAGGCCAGAAGCCCAGGGAGGAAGCTGAGTTGGGCCATGGGGTTGGGCAAAAAAGCTTGCACTCTTTAGGTGGGATAACAGGAAGAACTTAACTGTTTCCCTCCTTGGAGGGATGGATCTGTCCCAATTCCACAGCTGGGGAAGTTGAGACTGAAGGTTCAGGGCCTCCCCTGAGGTCAGGGGCCCCTGAGCTGGGCCTCTGCCTGCCTGCAGGGCCGCCCCAGGCCAGGCCGTTTCCACCCGGCTGCCCTGGACCCTCCCACCACCCAGCCGCTGGGCTTTGTTCTGGTTCTGCCTGAGCTCCCTCTGCCCTAGTGGGGCCTCTTCCCAGGGGCTCAGTGGCTGGTGCTGCAGGACCCAGGCAGTGGTGGAGGGGGGGTACGGGGGAGTGGGCGCAGATCCTCAGCTTTCCTAAGTTGGGTTCTCCGGCTGGGCTCTGGGTCTTGGCACTGTCCCCCGTGAACCCCTCTGACCCAGTCCATCCCATATGATAGGGCAATATCTGACCTCCCATTTTCAGATGAGGAAACCGAGGCTCAGTGGGGCAGTCGCCACCTGAGGGGCAGGGCTGGGTATCTGCAGCTGAGATTCATCTGTTTTGTTTTGTTTTGTTTTGTTTTTGAGACGGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCGATGGCGTGATCTCAACTCACTGCAACCTCTGCCTCCCGGGTTCAAGCGGTTCTCCTGCCTCAGCCTCCCAAATAGCTGGGATTACAGGCATGCGCCACCATGCCCGGCTAATTTTGTATTTTTAGTAGAGACAGGTTTTCTCTATGTTGTTCAGGCTGGTCTCAAACTCCCAACCTCAGGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCACCCAGCCTTTTTTTTTTTCTTTTTTTTTGAGACAGAGTCTCACTCTGTCACCCTGGCTGGAATGCAGTGGGTCAATCTTGGCTCACTGCAACCTCCACCTCCCCAGTTCAAGCGATTCTCCTTCCTCAGCCTGCCAAGTAGCTGGGATTACAGGCATGCGCCACCACGCCCAGCTCATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTGACCTCAGGTGATCCACCCTCCCCCGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCAGAGATGCATCTGTTTAATTCCCTTAAGTGGTGGTTCTACTCTGTGACTGTCTCTGTGTGTCCCCTGGGTGTCCAGCTGGAACCCCAGGGGTAGTTGCTCCAGGCCCAGGCCTTGGAGAGCCCCCAGCTCCTGGTGGCAAGAGACCAGGGGAGTCCAAGGGCAGGGGCCAAGGGGAGAAGGTTCTGGGGACATTTGAAGAATAAGGCCTGGACCTTCCTGCTTGGGGGCTGACCCAGGATGGGGAGCTCACCACCTCTCAGGGTGGGGCCACCTGTCTCATCCCTGCAAGAGGCAACGGCATTCACTGAGGGCTGACCAGGAAAATCTCCAGCTTGCATAGGGGTTGGGTGGTCCTCTCGGAAGAGCGTAGGTGTGGGGCCTTCAGGGCTGAGGACCAGAGTGACTTTGTTTACTTCCTCATTCCTTGGGGTGGGCATTGTGCGGGTGATAATGCTGGGGCCCCACAATGCTATGACCCCACAGACCACTAGCCCCTGGCCTGACCCCTAGTTAATTCACAAAGTCCAGCTCTCTGACCATGTCCTCTTTGCCTTCACATCTTTTTGGGGACAATGACCCTGCTCAGCCTGACAGTGACCAAATAAAATGAAACTCTTTAGGCCTCCATATTTGTGTATTTCAACCCTTTTGCTCTGGCTGTACCCTCTCTCTGGGATCACCCCGCCATTCACCTGGAGAACTCCTATTCATCCTTCAAAACCCATGCCAATGTGCCCTCCCTGGGGTGTTCATCTGCTTTTCCACAGATTCCTCTTCATCCATCACCACTCATCCGGGTTATCCTGTCTGGTTTGCAGACCTGCAAGCTGAGCTCCTGTACCCCTTTGGGGCTACCTCTCCAGTCTAGAGGGCCCCTACTAGTATTTCTGAGGGGCAGCCTCCAAAGGCGGCTCATAGGCTGGTTCGGGGAGGAGGATATGGGGGTCTCAGGGAGCCCTGGCTTCTGTGTGCCCCCAG
Seq C2 exon
GTCCAACCGTGACTGCCAGATCGACCAGCACCACCGGAACCAGTGCCAGTACTGCCGTCTCAAGAAGTGCTTCCGGGTGGGCATGAGGAAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160113-NR2F6:NM_005234:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.516 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PU(55.7=41.9)
A:
NA
C2:
PF0010513=zf-C4=PD(42.9=90.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)