BtaINT0103588 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011136 | NR2F6
Description
nuclear receptor subfamily 2, group F, member 6 [Source:HGNC Symbol;Acc:HGNC:7977]
Coordinates
chr7:5785643-5789941:+
Coord C1 exon
chr7:5785643-5785737
Coord A exon
chr7:5785738-5789356
Coord C2 exon
chr7:5789357-5789941
Length
3619 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TCTCTATCTCCCCTTCACAGCGG
3' ss Score
10.34
Exon sequences
Seq C1 exon
GTCTAACCGTGACTGCCAGATCGACCAGCATCACCGGAACCAGTGCCAATACTGCCGCCTCAAGAAGTGCTTCCGGGTGGGCATGAGGAAGGAAG
Seq A exon
GTGAGTACTCGCTGGGGTGGGGTGGGCAGAGGGTGAACAAGCAGCCTGCCCTTTGCTCCCTCTCTTGGGGTCTGGGAGCCATGGAGGGTGGGGTCTGGCGCCTGCTAACCTCGTTACCACCGATCCTGAGATCCCGTGGGCCTGGATCTGGCCCTGGGCTGGAGGAATCCAATTATCTGTGGCTGCCTGGTGGCTGAGGCAGAACTGGGCTGCAAGGGGCTCCCCGACTTTGGCCCATGTTAGAACCTTTCTCCCCACCACCTCTCCCAACCCGGCCTAAGGAACAGGGAACCTGAAGTTAACCCCGGTAACCCTCTGCCCTCTATCCTGGCCACCACTTTCTGAACAATGATGTACTTTTTTTTTTGATTTGCTTTCCCTCCACCCTCTGCCTTGTGTTTGCCCAAGGCAGGAACTCACCCGACTAAGGCAAAGGGCAGCTCACCCTTCCGCCTGACCGGGGATGCTGGGAGCCAGAGGGAGGCCCAGCCTCTTGTCCTTGCCCTGGGGACTTGGGTGGATCTGTGCAGGGCAGCTAGGTCTAGAACTCCACCGATCACTCTTAGAATTCAGGTGGAACCTATAGACTTCTGCACGAAGCACTGGGCTAGGGAGCAGAATCCGGCCCACTTCAATGTCGGCTCCAAGGCTGGACTTCGTGTCTCTGCCTGGACTCTTATCAGCCAGGCTGGCAGTTCTTCTCTGTGTCTAAAAGCTGAGTCTCTCCTGCTTTATTGTTGGTTTCTTCTCTGCTGAGTCTCTGTGAAAGAAGCTGGGAACAGCTGCCCAGAATCTTTCTCTTAAGATCATCTGATCACTCTCTTTGGTCATGTGAAGTTGGGGGTGACTGTCCATACCCCCACCCCCGCAACCTGGATTTTGTCTCCACTTGTGAATTTGACCTAAAATCCACATCAAATCCAGGCTTCAGATCTTCAGAGTCTCGAGGTGGAAATAATAAATCTCAGATCATGACCCGAACACAGCCCTCTCTTGGCCTTTGCACAGGTGGCTCCCTCTGTCTGGAACGCCTCTCCCAGACACCTACATGGCTTCCTCTCTCACCTTCTTTTAAGATTTGCTGAAACACACCTCCTCCGAGAAGCCCTCCTGATTACCCTTTGCAACCCCTTTATTCGGGCCATCTATTTTGCTTTATAATTTGCTTGCTCCTCCATCAGAATGTCTGCTCCTCAAGATCAGAAACTTTTGTCTGTCTTGTTTTCTGACACATCCCCAGAGCCTACACCAGGTTCTAAAACATAGAAGGTGCTTAATGTTTCTTGGCTTGAGTTACTATCCATTTAGCTCTTACTATGAGACCCTGGTTCGATTCCTGGGTTGGGAATATCTACTGGAGAAGGGATAGGCTACCCACTCTAGTATTCTTAGGCTTCCCTTGTGGCTTAGCTGGTAGAGAATCCACCTGCAATGTGGGAGACCTGGGTTCAATCCCTGAGTTGGGAAGATCCCCTGGAGAAGGGAAAGGCTACCCACTCCAGTGTTCTGGCCTGGAGAAGTCATGGACTGTGTAGTCCATGGGGTCCCAAAGAGTCGGACACGATTGAGTGACTTTCATTTTCATGTTCCAAAAGCTACTCCAAGCCGGTTAGATACATTCTCATTTAATTCAGTGATTGGTGTTATCATCGTCATGATTATCAACTGCATACTTTTATGGGTGGGGAAAGAGTACAGAGAGCAATCTAATTGTGGTTGGGATTTGAACCCACACAGTCTGGGCTTAATGGGGAGGAAGAGCTGGGAAGGGGTTCTCAGGAAGCAGGAACAGCAAATGCAAAGACCCTGAGGTGGCCGGGTGATGGATGAATGATGGCAGTGGGCTTTAGAACCAAGTGAGCCAGAGGTTAATTGGGATTCATTGTTGGAGAAGGCAATGGCACCCCACTCCAGTACTGTTGCCTGGAAAATCCCATGGACGGAGGAGCCTGGTAGGCTGCGGTCCATGGGGTCGCTAAGAGTCTGACACGACTGAGCGACTTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAATGTTCTTGCCTGGAGAATCCCAGGGATGGGGGAGCCTGGTGGGATGATGTCTATGGAGTCACACAGAGTCGGACACGACTGAAGCAACTTAGCAGTTGGCCCTCAACCCAGCTACACCCATTTGACAGACAGAGGCTCCTGGGACTTCAAATCACATGGGATAAGGCTTGAACGCTGCTTCCCTGATCAGCTCTGCTAGCCCTCAGCTCCCACTTGGGTCCCTCTCCCGCTCTGCTCCATGGTGGGTTGACCAGAAGTTCATGGAGGTGATGAGACTTGGGCATGTCACCTCATTAAAGCTTATTAATTAGTCTCTGCTGGGCATCCAGCCCAGTCAGCCCCTCCACCCTGCCCACTGTGGCATGGGCCAGGCTGGCATGCAGCCACCCTTCCTCCTTGCACCTCAGCTTTCCTCTTGTCACCTACGTGATCCCTGGGGGCACTGGCCAAGGCCAGCACTTGGTCCTTCCCCATCACAGGCAAAGCTACTGATGGAATCTCAGGTTTACTGAGCACCTGCTACTGACCGGGTTCAATCCCTGGGTCAGGATCCCCTGAAGAAGGGAATGGCTACCCGCTCCAGGGTTCTTGGATGGAGAATCCCATGGACAGAGGAGCCTTACGGCCTATAGTCCGTGGGATCGCAAGGAGTCGGACACGACTGAGCAACAAACACTACTTTTTGCTAACAGCGACTTTTTGCTACTGACCAGGATTTCATTCTTAACATTGAGGTCACTGCAGAGGCCCAGGCAGATGAGACCTGCTCTAGGGGGCCATGACCTGGAGGGTGGGGCTGGGAGGTGGAGAAATATCCTACTTCCATAGGAGAGATCAGTGCCAGCTCCTACTGATCACTTGTTTGAGGGGTAGGCTGGCTATGTGCCCATGTCCTAGGAAGGTGCTTGCCCCCCCTAGACCCATTATCAGCTCTTAGACTCCTATGATTGACAGATGAGGACATGATTGATAGGTCTGGCTTCCCTGGCTGCAGAGGGGAGCTCACACAGTCCAGAAGAGGGGGAGGCGGGTATGTGAATTAGCCCTCACCCAGTGGTCCTATTTCCACCTGAGATGCTCCCCCCCCCCAACCCCGCACTTCCTTCTCTGAAAGAAGTAGCCTGATGGTGGCTGGACATGACCTCAGGGCACAAGGGTGGAGCAAGGTGGGGCCTGCAAGACCTTGGCCTCTGTCCTCCCAACAAGCATTGTGCCCATGAGGTAGGGATTGGGGGTTCAGGGAAAGGCTGAGTTGGGGTCTTGGAGGGGAGGGAATGAGTAACCCTCTGATAATTTTATCTCCAACCTTTCTTCCTCCCTACTTGCCCCACCCCATGACTCGGGGTACCCACTTTCCCCCTACTTCCTCCCCGCCTTCCTCACACCCCACGCTCCCCTCTCTGGTTTCCCGTGTCCTCACTCCCCATCTTCTGATTCTTGCCCCGCTCCCTGTCCCCACTCTCCTCCTCCCTCTCCTGTACCTTCCGCATTTCTTGCGGGCTGGCAATCTCCCTCCCCCTTCTCCTCCTCCCCACCCCCTCATCTCTATCTCCCCTTCACAG
Seq C2 exon
CGGTGCAGCGCGGCCGAATTCCGCACTCGCTACCGGGCACTGTGGCAGCCTCCTCGGGCAGCCCTCCTGGCTCTGCGCTGGCCGTGGCCGGCGGAGACCTCTTCCCGGGGCAGCCGGTGTCGGAGCTGATCGCGCAGCTGCTGCGTGCCGAGCCCTATCCCGCGGCGGCCGGGCGCTTCGGTGCAGGAGCCGCGGGCGCTTTCGGAGCCGGGAGCGGCGCGGCGGGCGCGGTGCTGGGCATCGACAATGTGTGTGAGCTGGCGGCGCGGCTGCTCTTCAGCACCGTGGAGTGGGCGCGCCACGCGCCCTTCTTCCCCGAGCTGCCGGTGGCCGACCAGGTGGCGCTGCTGCGCCTCAGCTGGAGCGAGCTCTTCGTGCTGAACGCGGCGCAGGCAGCGCTGCCCCTGCACACGGCGCCGCTGCTGGCCGCCGCCGGCCTGCATGCCGCGCCCATGGCCGCCGAGCGTGCCGTGGCCTTCATGGACCAGGTGCGCGCCTTCCAGGAACAGGTGGACAAACTGGGCCGTTTGCAGGTTGACTCCGCGGAGTATGGCTGCCTCAAGGCCATCGCGCTCTTCACACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011136:ENSBTAT00000014791:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.046
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PD(42.9=90.9)
A:
NA
C2:
PF0010425=Hormone_recep=PU(65.0=60.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]