MmuINT0110520 @ mm10
Intron Retention
Gene
ENSMUSG00000002393 | Nr2f6
Description
nuclear receptor subfamily 2, group F, member 6 [Source:MGI Symbol;Acc:MGI:1352453]
Coordinates
chr8:71375749-71378483:-
Coord C1 exon
chr8:71378389-71378483
Coord A exon
chr8:71376274-71378388
Coord C2 exon
chr8:71375749-71376273
Length
2115 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
TGCCCTGTTTCCCTCTGCAGCCG
3' ss Score
11.91
Exon sequences
Seq C1 exon
GTCCAACCGTGACTGTCAGATTGATCAGCACCACCGGAACCAGTGTCAGTACTGTCGGCTCAAGAAGTGCTTCCGGGTGGGCATGCGCAAGGAGG
Seq A exon
GTGAGTAGCCCTAGGGATGTGGCTGTAGCCAGGCCCTTGTTGGGGACCTGAGGGGAGGCAGCTAGGATACCAGATGCCTGGTAGTGGGGTGCAGCCACTCGGTTTTTTCCCCAGGCCCCGCCTGACCTCTGACCTCAAAGGGCAGCTCCTTGCCCTTTCTCCTTGATGACCTCTCCCGATCTCCCCTCCCCCCTTTCTGAACTGGGAGGATTATTTTTACTTTTAACATTTGTTTACGCTCTGTTCTGTATGTTTGCTGAAGGCAGGATCCAGCCAGTTTATAGCCAAAGGCTGCCAAGGGGAGACTCAGTTGCCTATCCCTGCCCATGAGACCTGGGGAGACAGACTGCACAGCTGGGCCTCAGATCCTTACAGTCAAGTGCAACCTGGAGGCAGCCACTCAGAGCCCTATGGATCGGGTGCCTGGGCTGCTCCAGAAGGGGGGGCTGCTTGAGTGCCCCAGTCCAGCCTGGGGTGTGGGTCAGCCTGGGGTATGGGCCAGCCTGGGAGGTACATCATGTAACAGGCTTCTGAGAACCTGACAGTCAGGCATAGTGGTGCATGCAGGCTTGTCATCCCAGCATCTATGAGGCTGAGGCAGGAGGGTTTCCAGTTTGAAGTCAGCTTGGGTTACATAGCAAAACCTGGTTAGAGAAAAACCACATGCACGTAGGCACATACAAAAAACCAAACAAGCACCAGCCTTATTTGATGACTCTTTGGTCCCTTTAAGTTTGAAGGTGACTCCTGCTCTGTCCTTGCCCAGACTGAATTTTTGTCTAAACTTGTCTGTCTGATGGAAAGTCCTGATAGGTCTCTAGGCAGAGCCTGTGATCGCTGGGACTCTTGCTTCTAGTGCCGTCCTGCCTCAGGGCCTTTGCATAGCCGTTCCTTCTTCCAGATGTAGCCTGGTACTTCCCTCACCTCCTTGATTGTTAGTTCCTCAGGGTGCCCTGCTTATTGAGTGTGCAGTCCATGCTGCTCTGAAACTGACACCATTCATGTGCCCATCTCCTGAGCCTGCTGCAAGGTCTGATACTCAGCAGGATTCAACAAATGGTTCTTGTCTGGAATTACCATCCACCCAGCCCTTCACACCTGACAGGCATATTGAAAGCAAAGTCACTTAGATCCTCAAGTAGCTTCGTGGTCATCTGCCTTTGACACAGGAAGAACCAGGCAGAGAGCACAGGGTGAGGAGTGTGCCGACCTGTGAATTCCAGCAGTCTAGACTGGGTGGAAGAAGAGAGGAGAGAGGGAAGGAGCAGGATTTGGAGGTGTGGAACATTCTGGGCACAGGCCCTGCAGTAGGACCAGGGCTGGATGAGGGAGCAATAGTGAGGGTTCCCATCCTGTCAGCAAAGGGAGGGTCTTGGGCCATTTGAAGCCCAGTCTGGCTCCAGCTGACAGGCGGTTCCCAGGTTCTCTATGTTTGGCCTGGGTGCCTCAGTGCGGTGTCCCTGCATCCCTGGCTCTCGCTCTTCCTGGGCTGACCTGGAGTTCACCCACCAGTGAGACAGGTGTCAGCTCATTAAAGCATGCTCATTAGACGCCTCCTGGCTCCCTGCCCAGGCTGCCTTCCCCATGCTAAAATGCCCTGGGGAGCCAGCCTGTGTTCTTGGTGCCTCAGTTTACTTTCACTCTGTTCCTGACTGAGGACTCAGATAAGCATTGGATTTTTTTTCCAGTTATTTTTTGAAACAGTTGTAGCCCATTCTGGCCTCAAACTTAGTTTGTGCTGAGGTTGGCCTTGAGCTTCTGACCTTCTTGCCTCCATGCTCCAGAGCTGGAATGGCAGGTATGTACCACCATAGGCAAAGCTAACAATGGCAGCCCCTGCTCTTGGGGACCACTACCGGTGCCATGCTGCATTAGCGATGTGGTCCCCCTGGGGAGAATTGCAAGTAGCGGGAGAGGCCAGAGACAGAAGCTGAGTTCTCAGTGATTGACAGATGTGGCCTCCACGTTGCAAGAGGAGGTGCAGCTGGTGGGGATGCTGGGGGTGGCCTCCGGACACTGCTAGTGCCCAGTGTGTGCCCGGTCCCCTGTGTGGCCTCACGGGGTGGGGGTGGTCTTCCCACGCTGCCACCTGACGTGCCCTGTTTCCCTCTGCAG
Seq C2 exon
CCGTGCAGCGAGGCCGCATCCCGCATGCGCTCCCCGGTCCAGCGGCCTGCAGTCCCCCGGGCGCGACGGGCGTCGAACCTTTCACGGGGCCGCCAGTGTCCGAGCTGATTGCGCAGCTGCTGCGTGCTGAGCCCTACCCCGCGGCCGGACGCTTTGGTGGCGGCGGCGCTGTACTGGGCATCGACAACGTGTGCGAGTTGGCGGCACGCCTGCTGTTCAGCACGGTCGAGTGGGCCCGCCACGCGCCCTTCTTCCCCGAGCTGCCGGCCGCCGACCAGGTGGCGCTGCTGCGGCTCAGCTGGAGTGAGCTCTTCGTGCTGAACGCGGCGCAGGCGGCGCTGCCGCTGCATACGGCACCGCTGCTGGCCGCCGCGGGGTTGCATGCCGCGCCCATGGCAGCCGAGCGGGCCGTGGCCTTCATGGACCAGGTGCGTGCCTTCCAGGAGCAGGTGGACAAGCTGGGCCGCCTGCAGGTGGATGCTGCGGAGTACGGCTGCCTCAAGGCCATCGCGCTCTTCACGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002393:ENSMUST00000002466:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=NA C2=0.059
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PD(42.9=90.9)
A:
NA
C2:
PF0010425=Hormone_recep=PU(65.0=67.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types