RnoINT0102978 @ rn6
Intron Retention
Gene
ENSRNOG00000016892 | Nr2f6
Description
nuclear receptor subfamily 2, group F, member 6 [Source:RGD Symbol;Acc:621685]
Coordinates
chr16:19771694-19774424:-
Coord C1 exon
chr16:19774330-19774424
Coord A exon
chr16:19772219-19774329
Coord C2 exon
chr16:19771694-19772218
Length
2111 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
GCGCCCGTTTCCTTCTGCAGCGG
3' ss Score
9.52
Exon sequences
Seq C1 exon
GTCCAACCGTGACTGTCAGATTGATCAGCATCACCGGAACCAGTGTCAGTACTGTCGCCTCAAGAAGTGCTTCCGGGTGGGCATGCGCAAGGAGG
Seq A exon
GTGAGTAGCCATGAGGACATGGCCATATCGAGGCCCGAGTTGGGGATCTGAGGGGGGGCAACTAGGATCCCAGATGCCTGGTGTGGGGTTCAGCCACTCAGCTCTTTCCCTAGGCCTTGCCTGACCTCTGACCTCAAAGGGCAGCTCCTTACCCTTTCTCCCTGACCACCTCCCCCTTTTTGAACTGGGAATATTATTTTTTACTTTTAAAATTTGTTTACTCTCTGCTCTGTGTGTTTGCTAAAGGCGGGGTTCAGCCAGTTTATAGCCAAAGGCTGCCAAAGTGAGGCTCAGTTGGCTGTCCCTGCCCGTGAGACCTGGGTGGACAGACACACTATACAGCTAGGTCTCAGATCCTGTTAGGTGCTCTCAGAATTCAAGTGCAATCTAGAGGCAGCCACTCAGAGCCCTAAGGGTTGGGAGCCTGGGATGGTGCAGAAGGGGAGGCTGCTTGAGCTTCCCAGTCCAGCCCGGGGCATGGGCCAGCCTGGGACATCATGTAACATGCTTCTGAGAACCTGACAGTGGCCGTTGTGAATTGTTGGCTTCACACCTGACAGTCAGGCATAATGGTGCAGGCTTGTCGTCCCAGCATCTGTGAGGCTGAGGCAGGAGGATTTCCAATCTGAAGTCAGCTTGGGCTGCATAGCAAAACCTGGTTAGAAAAAACATGCATTGGGCACATACAAAACAAACAAGCGTCAGCCTTCTCTAATGATTCTTTAGTCCCTTTAAGTTGGAGGTGACTCCTGCTCTGTCCTTGCCCAGAATGAATTTGCCTCGACCTGTCTGTCAGATGGAAAGTCCTGATAGGTCTCTCTCTAGTCAGAGCCTGTGATCGCTGGGACTCTTGCTTCTAGTGCCGTCCTGCCTCAGGGCCTTTGCATAGCTGTTCCTCCTTCCAAACGTGGCCTGGCACCTCCCTCACCTTGATTGTTAGTTCCTCCAGGTCCCCTGCTTGTTGAACCCCCAGTCCTTGTTGCTCTGAAACTAACAGGGATCGTGTGTCCATCTCCAGGGCCTGCTGCAGGGTGTGGTACTTAGCAGGAGTGAGCAAATGGTTTTCAGCTGGAGTCACCCACCCAGCCAGCCTTTCACACCTGACAGGCATATTGAAAGCAGAATCACTCAGGTAGCTTAGTGGCCTTCCACCTTTGACACAGGAGGAAACAGGCAGAGAGCACATAGGTGAGAAGTGTGCTGAGCTGAATTCCAGCCGTCTAGACTGGATAGAAGAGGAGGAGGAGGGGAGAGGGGAGGAGCAAGATTTGGAGATGTGGAACATTCTGGGCAAAGGCCCTGGAGTAGGACCAGGGCTGGATGAGGCAGCAATAGTGAGGGTGGGGTTCCCGACCTGTGAGCAAAGAGAGCATCTTGGGAGCATTTGGGGTCCAATCCGGCTCCAGCTGACAGGTGGTCCCCAGCTTCTCTGTTTGGCCTGGGTTCCTCCTGTGCCCCCTGCATCCCTGGTTCTGGCTCTTCCTGGGCTGACCTAGAGTTCACCCACCAGTGAGACAGGTGTCGCTCATTAAAGCTCGTTCATTAGACGCCTCCTGGCTCCCTGCCCAGGCTGCCTTCCCCATGCTAAAATGCCTCGGGGAGCCAACCTGTGCTCCGTGCCTCAGTGCCTCAGTTTACTTTCACTCCATTTGTGACAGAGGACTCAGATAAGCATTTGGACTTTTTTTTTTTTTCCAGTTAGTTTTTGAAACAGTTGGAGCCCATTCTGGCCTCAAACTTAGTTTATGCTGAGTTGGCCTTGAGCTCCTGACCTTCCTGCCTCCACTCCCCAGGGCTGGGATGGCAGGTACGCACCACTTGCTAACAATGGCAGCTCCTGCTCTTGGGGACCACTACCATACCGCATTAACGATGTGGTCCCTCTGGGAAGAATTGCAAGTAGCAGGAGAGGTCAGGGACAGAACTGGAGTTCTCGGTGATTGACAGATGTGGCCTTAACGTTGCAAGAGGAGGAGGTGCAGCTGGTGGGGATGCTGAGGTGGCCGCCAGACACTGCTAGTGCCCAGTGCGTGCAGGGTCACTTGTGCGGCCACGCGGGGTGGAGGTGGCCCTCCCGCGCTGTCGTCTGACGCGCCCGTTTCCTTCTGCAG
Seq C2 exon
CGGTGCAGCGCGGCCGCATCCCGCACGCTCTCCCGGGTCCCGCGGCCTGCAGCCCTCCGGGCGCGGCGGGAGTCGAGCCGTTCGCGGGGCCGCCGGTGTCCGAGCTGATCGCGCAGCTGCTGCGCGCTGAGCCCTACCCCGCGGCTGGGCGCTTTGGTGGCGGCGGCGCCGTGCTGGGCATCGACAACGTGTGCGAGCTGGCGGCGCGCCTACTGTTCAGCACGGTCGAGTGGGCCCGCCACGCGCCCTTCTTCCCGGAGCTGCCGGCCGCCGACCAGGTGGCGCTGCTGCGGCTCAGCTGGAGCGAGCTGTTCGTGCTGAACGCGGCGCAGGCGGCGCTACCGCTGCACACGGCACCGCTGCTGGCTGCCGCGGGGCTGCACGCCGCGCCCATGGCTGCGGAGCGCGCGGTGGCCTTCATGGACCAGGTGCGTGCCTTCCAGGAGCAGGTGGACAAGCTGGGCCGCCTGCAGGTGGATGCTGCCGAGTACGGCTGCCTCAAGGCCATCGCGCTCTTCACGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016892:ENSRNOT00000022898:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.054
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PD(42.9=90.9)
A:
NA
C2:
PF0010425=Hormone_recep=PU(65.0=67.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]