HsaINT0115624 @ hg19
Intron Retention
Gene
ENSG00000160113 | NR2F6
Description
nuclear receptor subfamily 2, group F, member 6 [Source:HGNC Symbol;Acc:7977]
Coordinates
chr19:17346308-17351574:-
Coord C1 exon
chr19:17351480-17351574
Coord A exon
chr19:17346875-17351479
Coord C2 exon
chr19:17346308-17346874
Length
4605 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
CCTGTCCCCGCCTCCCGCAGCGG
3' ss Score
10.41
Exon sequences
Seq C1 exon
GTCCAACCGTGACTGCCAGATCGACCAGCACCACCGGAACCAGTGCCAGTACTGCCGTCTCAAGAAGTGCTTCCGGGTGGGCATGAGGAAGGAGG
Seq A exon
GTGAGTACGTGCTGGGGACACACTGGGGACGATCACAGCCGCTGGAGCCGGGGTGAACAAACAGCTTCTTCCTCCCCTTTTTCCCCTCCCTTTCACCCCTCCCTTTCACAGGGGTCTGGGTGCCTCACAGGGTGGGGGCCGGCGCCTGCTAACCTCATTACCACTGATCCCTTGATCCCGTGGGCTGCAGTCTGGCCCTAGGCTGGAGGAATCCAATTAGGATCCGTGGCCCCCTGGTTGCTGCCGTGGAGCTGAAGAGGCCAGGGACGCCCCACAAGGGACTTTCCCCAGCCCCATTCTCTTGCAGGAGCTGCCTTCCCCAATTACCCCCGACTCCAGCCTCAGAGGCCAGTTCCCTGGCCCTGACACCTTGGTGACCTCTTGTCTGCTAGCGCGGCCACCGCGTTCTGAACAAGGATTTTTTTTTTTATTTGATTTGTTTCTCCTCCACCCTTCACCCATGCTTTTTGTTTGCCCAAGGCAGGAACTCTGCCCGATTAAGGCAAAGGGCAGCTTACCCTTTCTTCTGACCCCGGGCGCTGGGAGCAAGAGTGAGGCCCAGCTGTCTCTGCTCAGGGGACCCAGGTGGACGGGCGTATTCTGGGCTGCTGGGCCTAGAACTCTGCCAAACCCCCTTAGAATTCAAGTAGAACCCAGAGATTTCTGCATGGATTTCTGGGGTTCAGGAATAGAATCTAGCCTATTGGACGAGATCTCCTGTGCTGGGTTTCAGGTTCCTCTGGGGACTGTGTCGTGGGCCAGGCTGGCAGTTCTTTCTAATGTCTAACCTGAGCCTCCCCTGCTTTGAAGTTTTTTTTTCCTTATTTTCTTTATTTATTTTTATTTTTATTTGAGATGGAGTCTCGCTCCATCTTCCAGGCTGGAGTGCAGTGGTGTGATCTCAGCTCACTGCAGCCTCCGCCTCCCGGGTTCAAGTGATTGTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGATACGGGCCAACACGCCCAGCTAATTTTTTTTTTTTTTCTGAGACTGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCATGATCTCGGCTCACTGCAGGCTCCGCCCCCTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCGGAGTAGCTGGGACTACAGGCGCCTGCCATCTCGCCCGGATATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCTGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTAAGCCACCGCGCCCGGCACGCCCACCTAATTTTTGTATTTTGTTTTGTTTTGTTTTTGAGACAGAGTCTCGCTCTGTTGCCAGGCTGGAGTGCTGTGGTGCCATCTCGGCTCACTGCAACCTCTGACTCCCTGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACATGCCACCACGCCCAGCTAATTTTTGTATTTTTAATAGAGATGGAGTTTCACTATGTTGGCCAGGATGGTCTCGATCTCCTGATCTCGTGATCTGCCCGCCTCGGCCTCCCAAAGTGTTGGGATTACAGGCGTGAGTCACCGCGCCTGGCCTAATTTTTGTATTTTTAATAGAGATGGTGTTTCACCGTGTTGGCCAGGCTGGAGTCTCCAACTCCTGACCCCAGGTGATCCGCTCGCCTCAGCCTCCCAAAGTGCTCGGATTATAGGCATGAGCCACCCCACCCGGCAGCTTTTTTTATTTTCTAGAGACAGAGTCCCACTATGTTGCCCAGGCTGGTCTCGAACTCCTAGCTTGAAGCGACCCTCCCACCTTGGCCTCCCAAACTACTGGGATTACAGGAATGAGCCACCATACTTGGCGTAAAGCTGTTGTTTTTTGGTCTAGGCCTTGGTGGGAGAAGCTGAGAGAGGCAGCTGAGGGGCTTTCTTTTAAAACTGATCACTCCCTGTGGCCCTTTTAAGTTTGGGGGTAACTTTCTTGTCCCTGCCCCCATAACATGGATTTTGCCTCTACTTGTCTATTTTACCTAAAATCCTCATATATCTCAAGTCATGGCCTCAGAGCAAACAGCCTCGCCAGAAGTCTCCAAAAGCCTCGGGTGGAAATATTTATGATGACAGCTCATGCTTTAAGCACACCTGCCTCGGGTCCTTTGCACGGGCTCTTCCCTCTGCCTGGAGTGCACTTTTTCCAGGTCCATACATGGCTCCCTCCCTAACCTTGCCTTCAAGGTTTGCTCAAACATCACCTCCTCAGGGAAGCCCTCCTGATCCCCCTGTATTTGACGCCACCTGTCTTGTTCTGTAATTTGCTTACACCCAGAATGTCCATTCCCTGTGGGCAGGTATTTTTGTCTGTCTTGTTCCCCAGCGCCTAGACCAGGGCTTGGTACACAGTAGGTGTTCAATAAATGGTCCTTGGCTTGAATTACCATGTAATTACCTTTCCTGTGTGGCAGGCATTATTTTAAGGTATAGATTCTCATTTAATTCAGTGATTGGTGACATCGTTTTTGAGACGGGGTCTCACTCTGTCTGGAGTGCAGTGGTGCGATCATAGCTCACTGCAGCCTTAAACTCCTGGGTTGAAGTGATTCTCCCACCTCAGCCTCCTGAGTAGCTGAGATTACAGGTGTTCGCTACCATGCTGGGCTAATTTCTTAATTTTTTGTAGAGACGGGGTCTCGCTATGTTGCCCAGGCTGGTCTCAAACTCCTGGGCTCAAGCGATCTTCCTGCCTCAGCCTCCCAAAGTGCTAGGCTTGCAAATGGGAGCCACTGTCTGCATTTTACAGATGAGGAAACTGAGGCACACAGCAGATTGGTGAGGCCATTTGTCAGAGAGCAACAGAGTTGTGATTGGGATTTGAACCTCCACAGTCTGGGCTGAAGAGCTGGGGAGGGGTTTGAGGAAGAGTGAACAGAAAGTGCAAAGGCCGGCCAGGCGTGGGGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCAGATCACGAGGTCAGGAGATTGAGACCATCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCAGGCGTGGTGGCAGGTGCCTCTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTCGAACCCCGGAGTCGGAGGCTGCAGTGAGCTGAGATTGTGCCACTGCACTCCAGCCTGGTGACAGAGCAGAACTCTATCTCAAAAAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGGAAGAAAGGAAAGGAAAGAAGGGAGGGAGGGAGGGAAAAAAGAAAAAGAAAAAGTTCAAAGGCCCTGGGGTGGGAATGTGGCCATGTGAGGGAGTGGTGGTTGCTCACAACCCAGTGAACAAAGCGGGAGGAAGCTTCCTGGAGGACCGGGGAACCACTTTTGGGCCCCATCCACCTATCCCCATTTGACAGTTGACTCAGACTCAGGGACCCCTTGGAGCGGGCTTCAACCCATGCCCTGGCTTCTCCGCTTAGCTCTGTTCGCCCCTGGCTTCTGCTCGCGTTCCCCTCCGGTGTTTGCTCTACACAGAGTTGACCTGGAGTTCACGGAGGTGATGAGATGGGGCATGCCAGCTCATTAAAGCTCATTAATTAGTCTGCTGGCAACCAGCCCAGTCAGCCCTGCCATCCCGCCCACCCCGGCACAAGCCAGGCAGGCACATGGCCAACTCTCTTCCTCTTCATGCCTCAGTTTCCCTTTTCTCACCCACCTGGTCACTGCAGACGTGCCCAAGCCAGCAGCAGGGCCTCCCCGCTTCATAAGCAAGGCTACTGATGGCGGCTAATGTTTACTGAGGACCTATGGCAGCCCCCCTGGGACCCCTCCTTACTGTAGGTCCCCCCCAACCCTTCCCTGCACTGTAGCCTCTGCAGGGACCCAGACCGGCCCTCAGGGGTCACCATCTGGTGGGGAGGGGGATGGAAGGTAGAGAAATGATCCCTGTTCCATAGGAGAGAGCCAGTGCTGGGTGGGTATTGATCTGTTGCTTTGGGGACCAAGCTGGCCAGGGTCCCCAAGTCCTCCATGGCCCATCCTCAGCTCTGGGAACCCCATGACTATCTGTTAGGAGGCTCCAAAAGGTTTATTAGATGCTCCTCCTTGTCCCCAGGAGCTGGGGGTGGGGGGTGGTGGCTGGACCTAGACAGGGACTCCTGGACTCTTACTTTCTAACCAGCCTGGCGCCCATGGGGTGGGGTTGGGCATTCTGGGAAAGGCTGGGCCTGGAGGCTTTGGAGGGGAGGGCCTGAGTGACCCCTTGATGACTTTTGTCTCCCTTTCCCGTTATTCTCCCTACCTGCCCCCCCCCACCTGCCCCCCACCCCATGTCTCTATGGGCACCTACTTGGCCCCTCATCCCCCCTCTTCCGGCCCTCTCCTCTCTACCCCTCGCTTCCCTTCCTGTCTCTCCAATCTCCTCTCCTCCCGGCCTTCTGTGCCCCGCCCTCCCCTCCCCCATCTCCTGTCCCTCCCCCGTTTCCTGCTGCCCGCCCCCCCCCCCCCCGCCTCCCCTCCCGCCCCCATGTCCCTCCTGTCCCCGCCTCCCGCAG
Seq C2 exon
CGGTGCAGCGCGGCCGCATCCCGCACTCGCTGCCTGGTGCCGTGGCCGCCTCCTCGGGCAGCCCCCCGGGCTCGGCGCTGGCGGCAGTGGCGAGCGGCGGAGACCTCTTCCCGGGGCAGCCGGTGTCCGAACTGATCGCGCAGCTGCTGCGCGCTGAGCCCTACCCTGCGGCGGCCGGACGCTTCGGCGCAGGGGGCGGCGCGGCGGGCGCGGTGCTGGGCATCGACAACGTGTGCGAGCTGGCGGCGCGGCTGCTCTTCAGCACCGTGGAGTGGGCGCGCCACGCGCCCTTCTTCCCCGAGCTGCCGGTGGCCGACCAGGTGGCGCTGCTGCGCCTGAGCTGGAGCGAGCTCTTCGTGCTGAACGCGGCGCAGGCGGCGCTGCCCCTGCACACGGCGCCGCTACTGGCCGCCGCCGGCCTCCACGCCGCGCCTATGGCCGCCGAGCGCGCCGTGGCTTTCATGGACCAGGTGCGCGCCTTCCAGGAGCAGGTGGACAAGCTGGGCCGCCTGCAGGTCGACTCGGCCGAGTATGGCTGCCTCAAGGCCATCGCGCTCTTCACGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160113-NR2F6:NM_005234:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PD(42.9=90.9)
A:
NA
C2:
PF0010425=Hormone_recep=PU(65.0=62.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)