MmuINT0110520 @ mm9
Intron Retention
Gene
ENSMUSG00000002393 | Nr2f6
Description
nuclear receptor subfamily 2, group F, member 6 [Source:MGI Symbol;Acc:MGI:1352453]
Coordinates
chr8:73899648-73902382:-
Coord C1 exon
chr8:73902288-73902382
Coord A exon
chr8:73900173-73902287
Coord C2 exon
chr8:73899648-73900172
Length
2115 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
TGCCCTGTTTCCCTCTGCAGCCG
3' ss Score
11.91
Exon sequences
Seq C1 exon
GTCCAACCGTGACTGTCAGATTGATCAGCACCACCGGAACCAGTGTCAGTACTGTCGGCTCAAGAAGTGCTTCCGGGTGGGCATGCGCAAGGAGG
Seq A exon
GTGAGTAGCCCTAGGGATGTGGCTGTAGCCAGGCCCTTGTTGGGGACCTGAGGGGAGGCAGCTAGGATACCAGATGCCTGGTAGTGGGGTGCAGCCACTCGGTTTTTTCCCCAGGCCCCGCCTGACCTCTGACCTCAAAGGGCAGCTCCTTGCCCTTTCTCCTTGATGACCTCTCCCGATCTCCCCTCCCCCCTTTCTGAACTGGGAGGATTATTTTTACTTTTAACATTTGTTTACGCTCTGTTCTGTATGTTTGCTGAAGGCAGGATCCAGCCAGTTTATAGCCAAAGGCTGCCAAGGGGAGACTCAGTTGCCTATCCCTGCCCATGAGACCTGGGGAGACAGACTGCACAGCTGGGCCTCAGATCCTTACAGTCAAGTGCAACCTGGAGGCAGCCACTCAGAGCCCTATGGATCGGGTGCCTGGGCTGCTCCAGAAGGGGGGGCTGCTTGAGTGCCCCAGTCCAGCCTGGGGTGTGGGTCAGCCTGGGGTATGGGCCAGCCTGGGAGGTACATCATGTAACAGGCTTCTGAGAACCTGACAGTCAGGCATAGTGGTGCATGCAGGCTTGTCATCCCAGCATCTATGAGGCTGAGGCAGGAGGGTTTCCAGTTTGAAGTCAGCTTGGGTTACATAGCAAAACCTGGTTAGAGAAAAACCACATGCACGTAGGCACATACAAAAAACCAAACAAGCACCAGCCTTATTTGATGACTCTTTGGTCCCTTTAAGTTTGAAGGTGACTCCTGCTCTGTCCTTGCCCAGACTGAATTTTTGTCTAAACTTGTCTGTCTGATGGAAAGTCCTGATAGGTCTCTAGGCAGAGCCTGTGATCGCTGGGACTCTTGCTTCTAGTGCCGTCCTGCCTCAGGGCCTTTGCATAGCCGTTCCTTCTTCCAGATGTAGCCTGGTACTTCCCTCACCTCCTTGATTGTTAGTTCCTCAGGGTGCCCTGCTTATTGAGTGTGCAGTCCATGCTGCTCTGAAACTGACACCATTCATGTGCCCATCTCCTGAGCCTGCTGCAAGGTCTGATACTCAGCAGGATTCAACAAATGGTTCTTGTCTGGAATTACCATCCACCCAGCCCTTCACACCTGACAGGCATATTGAAAGCAAAGTCACTTAGATCCTCAAGTAGCTTCGTGGTCATCTGCCTTTGACACAGGAAGAACCAGGCAGAGAGCACAGGGTGAGGAGTGTGCCGACCTGTGAATTCCAGCAGTCTAGACTGGGTGGAAGAAGAGAGGAGAGAGGGAAGGAGCAGGATTTGGAGGTGTGGAACATTCTGGGCACAGGCCCTGCAGTAGGACCAGGGCTGGATGAGGGAGCAATAGTGAGGGTTCCCATCCTGTCAGCAAAGGGAGGGTCTTGGGCCATTTGAAGCCCAGTCTGGCTCCAGCTGACAGGCGGTTCCCAGGTTCTCTATGTTTGGCCTGGGTGCCTCAGTGCGGTGTCCCTGCATCCCTGGCTCTCGCTCTTCCTGGGCTGACCTGGAGTTCACCCACCAGTGAGACAGGTGTCAGCTCATTAAAGCATGCTCATTAGACGCCTCCTGGCTCCCTGCCCAGGCTGCCTTCCCCATGCTAAAATGCCCTGGGGAGCCAGCCTGTGTTCTTGGTGCCTCAGTTTACTTTCACTCTGTTCCTGACTGAGGACTCAGATAAGCATTGGATTTTTTTTCCAGTTATTTTTTGAAACAGTTGTAGCCCATTCTGGCCTCAAACTTAGTTTGTGCTGAGGTTGGCCTTGAGCTTCTGACCTTCTTGCCTCCATGCTCCAGAGCTGGAATGGCAGGTATGTACCACCATAGGCAAAGCTAACAATGGCAGCCCCTGCTCTTGGGGACCACTACCGGTGCCATGCTGCATTAGCGATGTGGTCCCCCTGGGGAGAATTGCAAGTAGCGGGAGAGGCCAGAGACAGAAGCTGAGTTCTCAGTGATTGACAGATGTGGCCTCCACGTTGCAAGAGGAGGTGCAGCTGGTGGGGATGCTGGGGGTGGCCTCCGGACACTGCTAGTGCCCAGTGTGTGCCCGGTCCCCTGTGTGGCCTCACGGGGTGGGGGTGGTCTTCCCACGCTGCCACCTGACGTGCCCTGTTTCCCTCTGCAG
Seq C2 exon
CCGTGCAGCGAGGCCGCATCCCGCATGCGCTCCCCGGTCCAGCGGCCTGCAGTCCCCCGGGCGCGACGGGCGTCGAACCTTTCACGGGGCCGCCAGTGTCCGAGCTGATTGCGCAGCTGCTGCGTGCTGAGCCCTACCCCGCGGCCGGACGCTTTGGTGGCGGCGGCGCTGTACTGGGCATCGACAACGTGTGCGAGTTGGCGGCACGCCTGCTGTTCAGCACGGTCGAGTGGGCCCGCCACGCGCCCTTCTTCCCCGAGCTGCCGGCCGCCGACCAGGTGGCGCTGCTGCGGCTCAGCTGGAGTGAGCTCTTCGTGCTGAACGCGGCGCAGGCGGCGCTGCCGCTGCATACGGCACCGCTGCTGGCCGCCGCGGGGTTGCATGCCGCGCCCATGGCAGCCGAGCGGGCCGTGGCCTTCATGGACCAGGTGCGTGCCTTCCAGGAGCAGGTGGACAAGCTGGGCCGCCTGCAGGTGGATGCTGCGGAGTACGGCTGCCTCAAGGCCATCGCGCTCTTCACGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002393-Nr2f6:NM_010150:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.038
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PD(42.9=90.9)
A:
NA
C2:
PF0010425=Hormone_recep=PU(65.0=67.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: