BtaINT0103616 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009017 | NR5A1
Description
Bos taurus nuclear receptor subfamily 5, group A, member 1 (NR5A1), mRNA. [Source:RefSeq mRNA;Acc:NM_174403]
Coordinates
chr11:95514365-95521859:-
Coord C1 exon
chr11:95521712-95521859
Coord A exon
chr11:95515075-95521711
Coord C2 exon
chr11:95514365-95515074
Length
6637 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
ATCGGCTCCTCCCTCTGCAGATG
3' ss Score
10.95
Exon sequences
Seq C1 exon
GTGGAGCTGACCACGGTGGCCGCCCAGGCGGGCTCGCTGCTGCACAGCCTGGTGCTTCGGGCGCAGGAGTTGGTGCTGCAGCTGCACGCGCTGCAGCTGGATCGCCAGGAGTTCGTCTGCCTCAAGTTCCTCATTCTCTTCAGCCTCG
Seq A exon
GTGAGTGGGCTGAGCAAGGCCTGGCCTGGGGGTCAGGTGGATAACAGGTGGTGGGGTGGAGGTGGGGCTGGCGAAGAGACCCCAAGGTGGAGCGGTTCTCTGATGGGCGTCCTCGAAGAAGCCAGGCCCCCTCCCTTCGTGAATAAAGCTGTGAGGGGACCTGGTCCAGGGCCTGCTTTGTCTCTGGGCCTGAGTTTCTCTGTGTGGGAGGACAGAGGGCCAGGATAGGTCTAAGACTTGCCGTTTATGGGATAAGGACTTCTCCTGAGAATTTGGTAAATTCTTGGCTGAAAGCCTTAGGGAAGTGCCCAGGCCACCCCCAGAAAATGCCCATGTGATTTCAGGAGCTTCTGACCCCTGGTTCCCGTCCTGAGGTTCCCTGCTTTTCCTAATTCCCTGCTCCAGGGGTGTCTTTGAGGCCCAGACCCCTTTGCCCATTCATTCATTTTTTCATTCACTCACTCAAAAAAACAAAGAAACAAACCCAAATCCTTGTCTTCAAGGGAAGATGAGACAATAAGCATAATATGATTAGTAAACTATACAAATTAGTGAAATGACTAGTAAAATGTGTCACCTGGAAGACTGTGGTAAGTGCCAAGGAGGAAAAAAAAGCCGGGCAGGGGCAGAAGGCAGCCCAGGCCACCAGTTCTCCCAGCTCCACAAGTGTCTGGTGTCTGCCTCCTGTGCCCTCCTGATCTTGGCCCAACCTGTGCCACTCACGTCTCCACCCTCCTTCTGGGTTCTCATCAGGTCAGCCTCCCTCTGTCCTCCTTCACCCAGCAAGCTATGTCCAGTGCCCTCCTTGTGCCCAGTGATGCTGTGCCCCCGCTCTCAGGCAGCTCCCAGTCTGGGAGACACCTTTGCCCAGCACCATCAGGGCTGAGACAAAGAGATGGGGAATCCGGGATGGGGAGCAAGGGATCTGCCTGGAAGGCTTCCTGGAAGGGGGACATCTGAGCAGGGTCTTGGAGGATGAGTAGGAGTTTGCTAGGGGGAATACATCTTTTAGCAGAGGTATAGATGGGATGGAAGGTTGGAACAGAGGGAAGTGAATGCCTTGTCACCTGGAGAGAGGGCAGGACAGAGACGTTGTCTTTGTGGGAAATGACATCATAGTCACAGTCTGGCAAGTGTGTGCCTGCCCGAGAGTTGGGGCAGCTGGGGAAGCAGAGGGTAAGATAAAGGCTGGGAGTGGGGTGATTAGTGGAGTATTGACTGGGGGAAGCCCTGTGCTTAGGCTGTGATCAGGGGCCTGGGTGCCTAGGCTGGATTTCCTGACTCTGGCACAACAGGTTGGTAGCTGGAGGGGGCTTGTCTGCAAGGCTGCAGGGCTTGGTAGGAGCAACCATGGTGGAGGGTGGGGGCAGGATCTTGCCTCTAACAATGCAAGCTAGGGAAGGAAGTGAATGCATGCATGAATAAGTCTCTCTCCATCTTTATCTCACTCTTTATCTCACTCTTTGTGGGGAGTGACCTGGGTCATGATAATGACCCTGCGGGTGGGGGCCAGAATGTTGGGGCTTTGAGGGGAGAAGACCTATGACCCAGGCTTTTCTGAGCTCCTGGGTGCACAGTGAGAGGAAGCCAGGGAGCCACAGAGGCTGCTGGCTGACAGGTTCTAGGTTAGGGGAGGAGTCTGAGCAGTCCAGCGTGAGCAGGGCTAGGCCCAAGAGGAGAAACCAACGATAGCTTGGCTATTGGGGAAATCTGCCTGGAGGAGGGCCCTCTGCACTGGGCCTTGCTGTACGAGCAGGAGTATTCTGGGAGAAACAAAGCAAGCCGCAGCAAAGGCATTCCAGACAGAAGGAATAGCTGGTGCAGAGGGATGGGGAGAATCCTGACAGCTCAGGTGTAGCTGTGGGGCAGGGAGAGGGTGAAGAGGAGCCTGGAGAGGCAGGCAGGGGCCGAGCTGTGCAAGGCCTTGAAGGCCAGGCCAGTACCTTGAAGCTTCCCTGGGAAGAATCTGCAGCAGGAGAATCATGATCTAGTTTGCGTTTTGGAAAGGTCCTTCTGACTGCAGCATGGGAAAAGGATGCCTACGGCAGCCCAGAACCCTGCCAGAGGTTGGATGTGGGGCTGGGAGAAGCGGATACATCTGGGCAAGATGAGGGGCAAGATTTGCCCTGAGTCTGGAAGGTGGGAGGGGGCTACTCCCAGGATCCCACCCAGACAGCCAGACCGGGGTCCCCAAGGGAACTGGGAACCAAGAGAGGGGTGGCCACTTGCCCATCGCCCTTCAGCTGGCATGCTGAGCATCACCCCGGGGCAGCGCCTCCCTGGGCTGCTCAGCTTGAACCCTTGCGATGACTGTCCCCCCATTCCAACCGCCCCGCCCTCCCACCCTGCCCCTCCGCCCAGCGGCCCCTTCTCGCCTGCCTCCACAGAAGGGTGCCATTTGGTGTCTAAATAGCCGGCTCAGGCAGGCGCGAAGGCAGGTAAGGAGGTTTAATTAAAATTAGTGCCTCTCTCCTGGCAATCACGGTGTTTATGAAGATGGGCCCGGCTGGCATTGTTCTGCAGAGGACTTAATCGAAGCTTAATGGATTGACCTAACATTCGATTTCCTGACTTGCATTGAGGCGGCGGCAGCAGCATTCCCTTAAGCGTTTGCAATTTACCCACTGCTCGCGCCAACAAAAGGCGGCCTGAATAGCAGCCCCACTCGAGGGGCCATTGTGCGCGGGGGCGCCTGCCTGAGTCACTGCTATTGGGACAACATTCTTTATGCCTCGCTGGAATGAAAGGATTATTCAAATATTCAATTAAACCGTGAAAAGGGGGCTTTTCTGAGAACCTGGGGGCCCCCGGCTCCGCGGAGCTAGCGGGCTGCTCTCAGAGGTGGGGGTGCTATCTCCCAGCTCCCCCCCCCCCCAACCCACCCACCCCTGGGACTGCTGAGCAGGCCCATCTCCAACCTTCGGCGGCTCAGGGCTCATAGCGGGGCAGCAGATGAGGTCCAGCTCTTGGCTGCCCTGAGATGCAGAGCTGAATTTGCCCCCATTGTGCGGATGATGGGAAACTGAGGCTCAGACTGGGGAAGAGACTTGCCCCCGGTCACCCAGCTGGTGAGCTGGGATTTGAGCCCCCAACACAGGAGGGGACATCTTCAGGTTTTTGTGACTAAGGGAGGAAGGGTGTGTTGTCCAAAGGGATGTAGGCTCTGTCACATGGTCATCCCAGAGAATCTTCAGAGCAGTCCCTTTAGAGGGGGGCTAGGAGAAGAGGCATAGCTTGATCATGCTCCCCTCCAAGGGGGAGTCCAGAAGTCTCCCTGGGGAAACCAAGGGCCCCAGGCTGGGTGGTCCTTGGACTGGACTCCTGGGTTGGATGGAACATGAGGTCATCATGTCATCTAATCCCCCAGGAACCCATGTCGAGGCCCGACCCCGCCCCTGCTTACCCATAGTGCTTGGGAGCCAGAGAGATCTGGGTTCGAGTCCCAGCTCTGGTATCCACTGCGCGCTCCAGGCACACTCCACTGTCCTTAACACCTGCGTGAAGGACACCCTTTCCTGCCTGCCTTCCTGTCTGTAGGGATTAACTGATGGAGGTGGGCAGGGAAGGTGCGGTGGGTGCTGGGAAAACGACTTTCCTGTCTTGCACTGTGGTGGCTGGGGCTCAATTAGTGACGGTGCATCCCTCCCCGAGCCCTGCAGTCCACCTCGGGGGGCAGTGGGGTCTCCAGCCCGCTGAGAGCTGCCAGGAGGGGTGTGTCCCTGAAAGCTGTTCTTGCCTGCACCTCCCCACCCAGTGCTCCGCCCTGCTGTCCCTGTCACACCGCTGCTGGGAACAGTAAATCCTGGTAAAGCCGAGGCTCCGGTCCTCCCCAGCCCCCTCCCACTCCTGCCTCTACTGCAGCATCTTGGCCAGTCCTTCCCACACCCTCCTGTTTCCTCTGGGCCCCTTGCCTTCTGTGTGGCCTTGAGCTGGTCCCTACCCTTCTCTGGACCCCCAGCTTCCTATTGTAAATTGTCAGAAGACTAACTGGAGAATTGCCCAGCCCAGGGGATGGTAGGGATTGAAGGTAGATGGGGTTGAAAAGAGATTGGGAAATGGATGGGACTGGTAGGCACCTCTTGCCCCCAGGGAGGCTAGTTAGGTGGGGAGACTTCCCATGACCTTTGAGTGAGTCTGGAGAGGACCAGGCTAGGGAACAGTCATGTACAGTTGGACAGGTTGTTTAACTGAACAAGGGCGCCTAGACAGGGGAAGGTAGAGCCTGAAACCCAGCCTGCATGCCCCTCACCTTCTTTCTGTGAGGTACGGGGGACCTTCTGTATAACTGGCACAAAGGTGCCTTATGGGCTAATGGTAATTCTGGGGAGGCCAGGAAGAACATGACCCTGGTTCACTTAGTATATGAGGGGAGGGGAATATCATGGGGGAAAGATTGGAGCGGGGGAGTGCCCAGATCCTGCCATACGCCCGAGGTCCAGCTCGGATTTCCCTAAATCCGACTTTGGACAACACAGGCCTCGACGGGCACGCTGGGGGCGGCTGGGGATCAGGGTTGCCAGGAGCATCCAGCCCTCCTGGCGCAGCGGGTGTTAAGAGGGATTAGAAGGGCCAAGGGCTGCGCATGCTGGGCTCCAGACTCCCCCGCAGCGGCTGGGCTGCGAGCAGTGGGAGCCGAGGGGAAGTGGATGGACGACTGTTTTCTGAACCACAGGCTGCCACATCCCAGGCCACACGGGGCTAGGAGTCAGGGATGCGGACAGGATCTGTGGGTTCCTGCTGATCGGTAGCCCCTAGCCAGGGCACCAGCTGAAGATGCTGCCCAGGAGCTGAGGAGGGCTCCTGTGACAGGAAACTGGCCCTCTATGGGCACCCTGGGGGCCAGGCGCCTGTGCAGCTTCCCCTGCCTCAAGGTGGGCATGGCCCCTTTCATAGAGGACGAAGGCCTTCAGGTCAGGAGAGGATAGGGCGCGGGCCACCAATTCTAAGCAGTGGGGCTGGGATTTCAACCACCATCCATTTCACACTGGAGACACTTGATTTTTGTCTCCTCACTGGGCCTCTGGGCAGGACCACACTCCTTTGTCCCTGGTCCACACAGAGCTACCCAGCCACCCACCTGTCCCTCCCATCGGCAATTGTCTCTTTATGTTTTGTCCCTGTTCTTACACAATGTCTGTGTTTTCTGTGCGAGCATTTTTTATTGTTTTGGTTTTTGTTGTTTTTGGCTGCACTGGGCGGCATGTGGGCTCTTAGTTCCCCAACCAGGGATCGAACTCATGCCTCTAAGTTGGTAGCTCCGAGTCTTAACCACTGGGCCACCAGGGAAGTCCTTTGCAAGCATTTTTAAGTTATGTAGATGGCTTTTGGGCTTCCCCAGTGGCTCAGCAGTAAAGAATCCACCTGCCAATGCAGGAGACAGGGGTTTGACTCCTGGGTCAGGAAGATCCCTTGAAAAGGAAATGGAAACCCACTCCAGTATTCTTGACTGGAAAATCCCTCGGACAGAGGAGCCTGGCGGAATATAGTCCATGGGGCCACAAAAGAATCAGACAGGACTTAGCAACTAAGCAACAGCAGCAAAGATGGTGTTCCCTTATAGATCTCATTCTGAATCTCCCTTTTTTGTTTTTATTCTGTTTTCTCCCCGCACTCAGCCCCAGGCTTTTAAGGGTTTGTCCATTTGCTCAGTGCTGTGTCTGCTCCATTACTTCTGCCTACTGCACAGGACTCCTGGGGGTGTAGCCCCCGCCCGGCCATCCGGGCCACCTCCCCATCACTGTAAATACTGTTGCAGTGAGCATCCAAGGCCCCCTCCCCATGGCCCCGTGAGAGAATTTCCTTGGGGTGCTGGAGCCTCTTGATGGGTCAGAAGGTGGATCAACAGCGTGCCTGCCACTCTCTCCACTCACAGTTCGCCTCTTGGGATGGTGCTGATGGGTGATGATGGTGGTGGGGTGCTGATGCGGATGGTCACTCCCTGGAGACGATGGCGACAGGATGGTTTTGACCGTGGGGGATGGTGTTGGCCACGGACGTGGGGAGAGGAGGAGTGACAGTGACAGTAACCCAGGGAGCCTTGGGAAAGCACCAGACGCTTGTTCCTCTGAGCACTTTCTGGATACAGGCTCCCTGAACTCTCACAGCCGTCTGGTGAAGTAGATGCTACTGGTGCTCTTTTTGCCAGTGAAGAAATCGAGAGGTTCAAAGACAGATCCGAGGAGGGACCGGGGGAGGTTGGCGATGGTCTCAGTGATGGTGGCGGTGGGCGCGAGGACAGTGGCGGCGGTGGGCGTGATGACAGTGGCGGCAGCGGCAGTGACAGGTGCTTGTGGCTGGGTGACCAGCGGTGGCCGAGTATGTGACAACCACAGGGGTGTCAGCAGTGGTGACTGCTGCTGGTGGTGGCGTTCAACCAAGGTGTCGCTGGTGATGGCGACCCTGGTGGTGGCAGGAACGACTGAGGTTTGGTAGTTGACGGCGGCAGGGACCATGTGGGTGAAAACCAGGGATGCTGGTGCCGGTGTCTGCCAACCGCGGGCATGGCACCGTGGCGGTGATGGGGAGACTGTGGTGGCAGTGCCCACGTCTCTGGTGATCGCAGGGACGCTGGTGTGGGTGAAGCCAGCGACAGCGTCGGTGATGTGACGGGACTGGTGATCGGCTCCTCCCTCTGCAG
Seq C2 exon
ATGTGAAGTTCCTGAACAACCACAGCCTGGTGAAGGAGGCTCAGGAGAAGGCCAACGCCGCCCTGCTTGACTACACCCTGTGCCACTACCCGCACTGTGGGGACAAGTTCCAGCAGCTGCTGCTGTGCCTGGTGGAGGTGCGGGCGCTGAGCATGCAGGCCAAGGAGTACCTGTACCACAAGCACCTGGGCAACGAGATGCCCCGAAACAACCTGCTCATCGAGATGCTGCAGGCCAAGCAGACTTGAACTCGGGCCAGTGCGGGGGAGGGGGACCGGGCCGGGGCCAGGGGGCAGGTCACAGCACCCTCGCGGCCTCCAGGTGGTTTATTTTTATTACGCTGACCCAGGACCCCACCACGTAGGCCGCTGCCCCTCAGCTCTGGGAAGCCCCATGTTTGGGAAGGTGGGCGAGGGTGAGCAGGGCCTGGCTGAGGGCAGGTGGTCCCCACTCACTGCTGGCACTTGCCTGCTACTCAGAGTGCCCCAAGGAGGTGGCTGCTAGCCACTCCTTCCCTCCCCCTGCTCCCAGCTGTCTGTCCTGGAGTCTGGATCCCAGGCCCAGGGAGGAGGTTCGGATTCCCTGGTGGGCCTCAACGTCCCTTGAGTCAGAGGTCATCCCTTCGTCCTCTCCTGGGAGCAGAGGCAGAGAGAGGTCAAGTGGACATCAGCGGGCGGGAGAGGAGAGGGTCTCCAGACCCTCCTGGAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009017:ENSBTAT00000011869:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=FE(23.9=100)
A:
NA
C2:
PF0010425=Hormone_recep=PD(36.6=90.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development