DreINT0106162 @ danRer10
Intron Retention
Gene
ENSDARG00000103176 | nr5a1a
Description
nuclear receptor subfamily 5, group A, member 1a [Source:ZFIN;Acc:ZDB-GENE-010504-1]
Coordinates
chr8:52847150-52851868:-
Coord C1 exon
chr8:52851724-52851868
Coord A exon
chr8:52848464-52851723
Coord C2 exon
chr8:52847150-52848463
Length
3260 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
TGTGTGTGTGTCTTCCTCAGACG
3' ss Score
10.71
Exon sequences
Seq C1 exon
GTGGAGCTGTCGGCGGTGTTGGACGCTGGTCCTCCTCTGTCCAGCATGGTTGAGCGAGGGCAGGATCTGTCCCGCCGGCTCCAGCTGCTGCAGGTGGACAGCAGAGAGATGGCCTGTCTGAAGTTCCTCATCCTCTTCAACCCCA
Seq A exon
GTGAGTCTCACTACAACACACACTCACACTTCATGCTAGAAATGCTAAACAAATGGTGCCCAAACTTTTTTTCATATTAAGTGAATTAAATCTCACGGTTCTGATCACGTTATGGTTTTTTAGTCAAAGGTCGTACCATTTTTTGGGTCAGCCAAAAAGGGGAGGAGACTAAAGTAATTTGCTTTTCATTTATTACAGAAACAGCACCGCAAGATTCTTTTGCTTTTTAACAAACAGAACTTAGAAGCGGCAATTTTATTACAAATAAAATGAAGAAATAATCAGCTGAATAAAAATAAATAGTTCAATATTCAGTGCTGTGAAAAATTCACTGCTACTACAACTGATGCTGTTGTTGGATTGGCTAATCGGGAGGACCAGGAGAATTCCCGGTGGGCCGTGAGGGTAAGCAGCAAGAAACACCAAAACTAACCCGGTCTAAACTCCGACGCAAAGTTGCGCCTCGCCTACACACTGCTTAATACACACAAGAGAGCAATAGGCAAATATCTTTACATATGAAAACATTTAAATATTAAAGATATATATAGGATATAATAAGAATAGATATAGAATATAAATATAAAGGATTAAAATATTACAAAACATATTTTCTAGCCTACATAAATATGAAAAATCACTGCTTTTATGTCTTCTTCATCTCGGGAGGCTTTAGTTGTTGGTTCATTCTGCTGTGGTGACCTGTGAAATAGCGACTGAAGGAAAATAAATGATTGAATGATGTAAAATGACAATATGTAAACACACTGGAAATAACTACCTTAAAAACAATTACTAACAATTGAAACTTCCACCAGTGTTTATTCAGAAATTGCTTGTTAATTGGGGCGTCACGCAGGCACAGTGGTTAGCATGATCGCCTTACAGCAGAAAGGTGGCTGGTTCGAGCCCCGGCTGGGTCAGTTGACATTTTCCCCAAAGTCCAAACACATGAGCTAGAGGTGAATTGAATAAGCTAAACTGGCCAAAGTGTATGTGTGTGAATGAGATTGTATGGGTGTTTCCCAGTGATGGGTTGCAGCTGGAAGTCTATCCGTTGCATAAAATAAATGCTGGATAAGTTGGCAGTTCAGAATAATAATAAAGGGACTAAGCCGAAAAGAAAATGAATGAATGCTAGTACATTTTAGAAATGACAAAACAGCAAGAAACACAATAAAATAAATAAACTTTACATTTTAAGTACAAAAAAAATATTCAATTCCTAAAATAAAGGTAATTCAGTGCATTATAAATGAAAGCAATGTATATAAATGTTTTCCAGTTTGGTTTTATAATTACCGTCACTTTTATTTTGACAGAAACATACGAATTTAATGCAGAATTCAGATTTGAAAGATCATTCTGCTCCAATGTTTGTCTTTTCATCAAACCCCGATTTGATGAGCCACTTGCTGTTATGATTATATCCTAAATGCAGTAATTCATAAACATTCACACAAATAAATCCAGCTCTGTCTGAAAGCGTTCCTGGAAATGTCCAATTACAGTTTGGCGAGGCACAACAAACAAACAAACATCTGAAGGCAGAAAGACGTGGAGAAAGCTGAAGAATTTATCATCTGCTCTCTCACACACACACACACACTCGTTCGCTCGCATTGATTTTCTTCATTCTTTGGCTAAATGTGCGCAGCTTTGAGTCATTGATGTCCTTCAGACGCAGTGAAAAGATTATTCAACGTTTTAATTAGTGTGTGAATGGCTCTCCTGATGAGCTCCGCTAATGCTTTAAAGTGCTCCGTTAATGGCTTTATTGTCACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACAGGAAAAAAAGAGTTACAAAAGCTCGTCAATAGAGCACAATCTTAAAATGACAACCTTATTTACCTGTAAAAGATGAATAACAGAGCAAGCTGTCTAATTAAAAGGCTTCAAGCTGTTCACAATACAAACACAGTAATGAAACCTTCCTTATCTTCCTAGGAAATAAAACAAATTTCTGCAGAAGAAAAAACTATTAGAGGAAATACTGTGGAAAAAAATCTGTTCAACATCACCTGGGAAATATTTAACAAAGGAGTGACTTCAGCTGTACCTGATCCTGCTTTAGATCTTTTTCTTGGAACGCAAAATTACCCATGATGTTTTGCGTGTATGCGCAAGGAGAATGCGAAGGACTTCCGGTCGGCAGCTGATGCGTGTAAACAGTCACATTTGGACAGCTTTGAAACGATAGTTTTAATCTATTTTACCTGCTTTTATCCTCTTTGAACTAATACTGTTGTCCATCAGCAGCATCTCCTGGACTGATCATTTACAGAAATGCCATCTAATAGGATGGAAAACAGCTGCTATGAGGCGTTTCCCCCTCGTCAGACGGCATCTTCTGCAGTTTAAACATGGCTAAAGTCAACATTTTCTCTTTATTTCAAATATATAACCAGCCCAAACACATGTAGTTCACCAAAATGTTTGACACACACACGTAGCCTGTACTGTGCCACTGACACACTGATTTAATAACTGTGACAAAGTGAAAATATAGACTAGTGTCATTTCCAAATGACAGAAAAACACAAACCGTGGTGAAAACCACACACGAAATAAAACACAAACGGCTCGCGATTAGAATGAACAGCAAATCAGCAGCAGAGGATCAATAACAGACTTTTATTGCTCATTTTTGTAAATTGCATGACTTTCATACCTGTTAAGTTTCATGCCAGTACTCTGGTTTGCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTATTGAAGAGCCGCTGCGCTAACAGCTGACAGGCCGGGAACGCACACACACACACACTGTATTTCTGACGGCAGACACGTGAGCTAGGAGAACGTTTTTCTCGTATTTCTGACGCGCTTGAACCACATGTGACAGATTATAACGGCTTTAACAGACACATTTCTAAGTTGTGTGTCACAAAAACACTCTGTTATCCATTAAAAACGTCATTGAAACCCATTTCCTGAGCGCAAATTACCAGTTGTACACGCTGTAAACGGAAGTGTTTAGCATTCTACCGGAAGACGCTGGTCGCGATGGCGCCCTCCATGCAGCAGCTATGAAAAAGGTCTAAATTGACTGACTGAATACGTGTCTAATCTGGGAGGTGATGATGATGATGAATACCTGTGTGTGTGTGTGTGTGTCTTCCTCAG
Seq C2 exon
ACGTGAAGCTCCTGGAGAACCCGCAGTTTGTGGAGAGCGTGCAGGAGCAGGTGAACGGGGCTCTGCTGGAGTACACACTCTTCTCGTACCCGCAGTGTGTGGAGCGCTTCAGTCAGCTGATCCTGCGGCTGCCCGAGCTGCGTTCGCTGAGCGCCGAGGCCGAAGACTTCCTCTGCTACAAACACCTGTGTGGAGAAGTGCCCTGCAACAACCTGCTGATCGAGATGCTGCACGCCAAGAGGTCCAGCGCACAGTGAACACACACACACACACGCACGTACATGCTTTTCACACACTGCCGTCTGGTTTGTAGTAAGATAGAGATTCTGAAATCAAGAAGCATTTTCCAGAGCAGTTCCCAAACTTTTCCCAAAATAACGAGTAGGGTGAAGCTGCAGGCCCGGAGACCCAACTGCACGCTCAGACCTGCGCGCACACACCGATTGTTTTCTCAGACAGTGCCACCTGCTGTTGGAAGTCAATGTAGCAATAAACACCCATAACATCACCAGAGGGGAGTCAACAGGACCAAAGGTCCGTTCTTCGTACCTCGCTTAAATGATCGAAGATGATTTGGCAGATCCTGGATCTGTTAATCTTGATAACTGATCTCTCGCTAATTTGGTTCTTCAAACAAGTTCGCGAATCAGATTAGAATGTCTGGAACTGATCTGAGATCGCTGCGTGTGTTGTGAAGGACAGATCTATCCATCCTCGAAATCATGATCAGCAATGCAACGATTGGCTGACGGCACAGCAGCGTAATGACATCATCTGATTAATATTCAATTATCCATGTGAGCAAAATTCGCAGTCAACGGTTTGTTAAATATGATACGCAATAACTTTACACCTTGTTGTGGGCTGTATGCTTGGCTCTTTCATTTGTCAAGAGCAATTTATTTAGGTTTAGGTTTAACTTTATTTGTCCCCGAGAGGAAATTTGTCTTGGGCATAAAAGGTGCTACAACATTGTCTAAACAGACAGTAAAAATAAATAAAACAAAACAATTAAGAACAAACAGTTAAGAACATACATATTTAGTTTTACAGTTAGCGGATTTTCCTTATTATAGTAGTATTATTGTAGCCGGTTTTTTAATCGGTGTAAAGAATAACTATTTTTTACAAAAGCATTTTGATATTGGTAAAGGCGTCTGCAACTTTTATGAAGCATCAAATCACCGTCATATATTAACTGCCAAAACATGTTTATGACTGCATAAATGTATTATTGCTTTTAAAAAGTCACATATTGTGCACGTCTATTATCATACACAAATTGTACTAAAGCGATCTAAACAGTTCATACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103176:ENSDART00000162004:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PD(34.8=95.9)
A:
NA
C2:
PF0010425=Hormone_recep=PD(32.0=74.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]