MmuINT0110561 @ mm10
Intron Retention
Gene
ENSMUSG00000026751 | Nr5a1
Description
nuclear receptor subfamily 5, group A, member 1 [Source:MGI Symbol;Acc:MGI:1346833]
Coordinates
chr2:38692656-38700322:-
Coord C1 exon
chr2:38700175-38700322
Coord A exon
chr2:38694265-38700174
Coord C2 exon
chr2:38692656-38694264
Length
5910 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
ATGGGCTGCTCCCGTTGCAGATG
3' ss Score
8.82
Exon sequences
Seq C1 exon
GTGGAGCTGAGCACAGTGGCTGTGCAGGCTGGCTCCCTGCTGCACAGCCTGGTGCTGCGGGCCCAAGAGTTAGTGCTCCAGTTGCATGCACTGCAGCTGGACCGCCAGGAGTTCGTCTGTCTCAAGTTCCTCATCCTCTTCAGCCTCG
Seq A exon
GTGAGTGGCCTCTGCAGGCTCTGCAGTGGAGGGTGGTAAAGATGTTGAGGGCCCTACTGTGCTTAGAAGACCCAAGGGACAAGGATCCTCCTATAACACAGTGAGTGTTATAAGGGCACACTGTGGGTCAGGGCCTGGCTGCTCCCTGGAGGGACTTAGTTTCTTCCTGTGAAATCCTGAAGGCTGAGATGTTGTCTATGTTTTATTTTTCATGGGGTGAGGACCTTTCTGAACATCTGATTTGTGCCAGAAATTGCTCTTCATACCTAGCATACGTAAATGTCTGCTGCATTTAGGACTTTCTTCCCTGGCTCCCATCCTAGGGTCCCTACTTTTCCCTAACTCCCTGAACTACAGGGACCCAAGTTCTGACTCTAGATCCCTTTACCTGTACATTCATTCATTGTACAAACATCTGCTGGTGCCAGGGACTGGAAACAACGTAGCAAATGGGAAAGACCCCAACTGCTACCCTCAGTACTTAGGGGGACAGCAAGTGTCTTATAAAGGGCAGAATACATAGATGGGGGCCTACATAGCAGCACGATGCAACAATTACGGAGGTATGCCTCAGAGAGCCCAAGTCCTGGGCTAGAAAGCTTGGAAGAGAGAGTCTCCATGGGTGAGTTGTGCAGAGGATTCGTCAGTGGGGAAGCAGGTATGGAACTAGAGGGAAGACAGAATGGAGATATGTCTTTGTGGCAGTCTGGCAATGATGCTTCCTAGAGTATAGGAAGTGTTTGGAAACAGAGAGGAGAAGGGAGCTGGTGAGGAAGCCCAGTGCTCAGGCAGAGTTGGCCTACATGCCACTTCCATGTGGCTGGGGACAAGGGCCTGGGACTCTCAGCCTGGCTAGGGTTCCACAGAGTGTTAGGAAATGTCCACGATGAAGTTGCCACCTTAGAGTGTAGCACAGCCTTAGGTGTCCTGGCCACGCTTGGGAGGATCTTGGGTGAGGTGCTCAGCAAAGAGGACTTCTCAGCATCAGTCAGAGCTCCAGCCGTGCTCTCTCTCCTAAGAGAACCCCACGGCCCCCTTTCTCCTACAAGCAAAGTTACTAGGCCCAGTTGGACATTGGCCTCCCAATTTCTCCTGGGGCTGGACTCAGTGGTGCCTTGACTTGGGGCAGCTCAGCGCCCCCCTCCCATCCCATATGCTAACTTCACCTCCGGTAACTTAAGAGAGATCAGTGCTAGAGTGGGGAGCGTGGGAAGAGCCTGGATAAGTGCATGGCTGCCTGGAGTCTAACTCTGATCTCTCCGGCTTTGTGCAATTGAGCAAGTCACTCTCTGAGCCTCTATTTCCCCATGTGTGAAATGACATCCGTCAGTGTCCTTGACATGCTGCAAGGATACAATGAGGTAATACTACCACAATCCTGGCCCTCAGAAGTGTGTGCTGATGTTATTAATCATCCTTATTAAGTCCATAAACAGATGAGCCAGAGTGACTGAACAAACCAGCCTACAGGCTCAGTCTTTATCTATGCTTTGCGTCTGACTGAGGGCTTTATTGTCTCAGGTCTGGCCATGGTGGCTGAGGAGTTCTCAGCTCAGTGGGCCTGAAGTTGGGTTGAGGTAGGGGGTGTCAGAGGAACAGGAGACAGTGATTCTGGGACCTCAACCTACTGGAGCCTAGAATGAGGGGACGATGACTGAGACTCTGTGACTCTAGAGAACCCTGACTAATACACTGGGTTGTAGAGTCCTTGTAAAGAGACTTCATGTTGGGATAGGAGGTGAGCAGTCCAGTATGATCAGAGTTTGGTTAACTACTGGGTCAGGATGCAGGATGCAGTACATATATCTAAGCTGGACCCTGCAGTGTGAATAGTAGTGTGCTGAAACAAACAGAAGGAACAGCCTGTTGGAATTTATGGGGGGTGGGGGGTGGGTAGAGAGGAGACCATAAGGTAGACAGGGGATGAACTGTGCATGGCCTTGGTTATTGGGTACCTTGAGCCTTGCTCTGAAATGGCTCCCACTCTGGGAATAACATGACCACCTCACGTCTGCATATCACCATCTAAGGCCCTTCCAGCTGCAGCCTGGGGTAGGATAGTAGGTTGATAGCCCAAGCCCTGCAGCAGGCAACACCTGTAGCTGGGTGATGATAGATGGCCTTCTGACTCTGAAATGCAGGACTCCTCGTCAAAGCTGAGCTTTCAGGAACTAGAACTCAAGACAGGGCTGTCCACCTGTCCACAGATGTCTAGTCAGCCTGCTTATGGCATCCTCAGCATCACCGCCCTGGGCTGGGCAGCCTCAACCCCAGGCAGTAACTGTCACCCACCCCCACCCTGTCCCTCTCCACACACCTCTTTCTCGCTTGTCTCTGCAGAAGGGTGCCATTTGGCGTCTAAATAGCATCTCAGGCAGCTCAGAGGCAGGTAAGGAGGCTTAATTAAAATTAGTGCCTCTCTCCTGGCAATCGCAGTGTTTATGAAGATGGGCCCGGCCGGCATTGTTCCGCCGAGGACTTAATCGAAGCTTAATGGATTGACCTAACATTCGATTTCCTGATTCCCATTGAGGCGCACGGCAGCATTCCCTTAAGCGTTTGCAATTTACCCACCGCTCCAAGCCAACAAAAGACGGACTGAATAGCAGAGCCACTCGAGGGGCCATTGTGCGCGGGGGCGCCTGCCTGAGTCACTGCTATTGGGACAACATTCTTTATGCCTCGCTGGAATGAAAGGATTATTCAAATATTCAATTAAACCGTGAAAAGGGGGCTTTTCTGAGATCCCGGGGGCCCCCAGCTCATGGAGCTAGCGGCTGCTTCCAGGGTGGGGTGCCATCTCCCACCCTTCTGCCTCCAGGGATGTGGGCAGTACTGTCCATTCTGCAGGCCCAGGTCCCAGGCTGGTACTCAGCAAGGGTCCCTGTCCTGACCTGCCCCATCTTATAGAAGATAGGTTCCGGGGTGGCCTCTGGTTGCAGAGCTGGGGTGTGGGCCCCTTGGCATGTGAAGGGAGAATCTCCAGGTTGGGGACGAAGCCTGTTCCTGGCTCTGAGAGCAAAGGTTACCGCACTCAGTGTGATGTGGCTGTATTCCATCCCTTAGACTGGGTGAGAAGAGAGGTAAACTGATCTAAGGTTTCCAGGTGAGGGAAAAGTTAGGTGTGAGGTCAGATCCAGGGTGGGATCTTAGACTAACCCCATAGGTTGCAGAGAACCTGATTCGGAAGCCTTCCAGCTCTGGGAATCTCAGCCCCGCCCTGCCCGCCCGCAGCAGGAAGTCCTGCAGCTCCTAGAATCAGACAGGCTTGGGTCTGAATCCTTCCCTGATACCTGTGAGTGGTCTAGGCACACTCTTGCAGAATGCACTTCTTGCAGTCTAGATATCTGAAGGGATGACCCAGGCTGGTGCCATGAAACGGATCCCAGCTCTGGTCTATGGCTGCTGTGGGTGTCCACCCACCTTATAGCTGCCGCCATGCTCCAGGACCATGGAGGTCTTAATATGTGGGAACTGAGAGTCCAGAACCTTCTTAGAGAGGGGCTGTCCCTGAAAGTTGTCCTTGCCCTGCGCCCTCCCCCTTCTACCCCACTGTCATCCTGAGTCCCTGATGCTTGTTGCTGAGAACAGTAAATCCTGGTAAAGCCAGAAGCCGAGGCCCTGGTGTCTCCATCCCTTCCATCTGAGCAGCATCCTGGCCCATCCTCCTCCACCTCATCTCTTTCCTCTGAGCCCCTTTACTGGGTAGCCTTGAGGCAGACCCCATCTTTCTCCTGTTAAGAATGTCAGAATAACCCAGGAACAGTGTGGAGATGCTGGCTGATGATACAGGGATGGGAAAGGGGTTGGGGTAAGGACAGATGGGATCAGTAGGCATCTCTTGCTTCCAGGAGACCAGCTTGGTGGAATGACTTCCTGTGATCACCTTTAAATGTACCTGGAGCCAGCCAGGCTAGAGAGCCGGGTTGCTCTGTACAGTTGGGTAGGCTTCACTGTACAGGGGGACTGAGGCAAGGAAGGACTGGGCTGGAATCTCAGAGTGTGCCTCTAGACAAAGGGAGCTCTTTTTTTTTTTTTTTTTTTCTAAAAGGCATAAAGATGTCTGTGAACCGGTGGCAATCCCAGGGAAGGGAGGAGGAAAATGACCCTAGCTCACTTATTGGAGGGTGATGGGAGCCAGGGTAGAAGCCAGCAGCTGCCAAATCCTGCCATACGACTCAGGCCCAGCTCCGGTTTCCCTAAATCCATCTCTGGACAACACAGGCCTCAGCGGGTATGCTGGGCGCGGCGGAGGATCAGGGTTGCCAGGCACCTCAGCTTTCCTAGCGCAGTGGGTGTTAAGAGGGATTAGAGGGCCAAGAGCGCATGCTGGACCAACTCCCCCACAGTAGAAAGACTGGGGGTACCTACCCCAAGGGAGGAAAGCAGATGAGTGACCCATCTTGTGAACCTCTGGAAATGGCAGCCCAGCAGACACTAGGGTAGGCTCCGAGGGCTGGGGGGGCTGATGTTAAACTCCTAAGCAGGACATGAGCTGATAGAGGCTGAGAGCTGTGACAGGGGTTTGGTGACAAGGGAGGGACCCAGACACCCTGTTTCCAGCCCCTTTCCCTGAAGAAGGTGACCTTTTATGCAGAACAGGCAGGGACTTTTCCACAAGGCAGCTCACTCCTAACCAACTCCAATGGCGTCTTTTGTGTCTGAGGCAGGACTAAGGCCCAAGGATGCACTGATCACCACACTCCAGCCCCAGTCACATTTGGTCCACACTGAGCCACCTGCTCCTCTCTCTCTCATTGGGAGCTGGCCTTCCATGTCTATCTGCAGCTTCGTGGCGACCATTGTTCTCACACAGCATGTCTGTATGGAGAGGGCTAGTGAGCCAGGCTGCCTGCCTGCTCACCCGCCCGCCTTCTTTCCACCCTCCCCCAACCCTCTCTTTTCATTTTTTGATAGTATAGGGGATAGAACCAGGGCCCATGAGTGCCAGGCCAACAGTGTGCTCTAAGCTACACTTTACTTCAGTGCCATTTTACATTTATGGAAATGGCTTTGCCTTGCAAACCTTCAGTTCTTCCCACTCTCTCTTACCTGGCACTCTGTCCTGCTTTTCAACATGGCTCCACGTGCTCCGGGTATAACCATTCCCCAACTTCCCAGACATAACCGCATACACGCACCCATGACCCTTCTCTTCATGAACAGTGCTGCCAAGAAGCTGACCCCAGAATCCTATAACTGAGCCTCTTTCCAGGTATGCCCAGAGTGCTCATGGGTCTGACACCCTAAGACAGGTGCTTTGGACAGTGATGTTGATGGTGGTGTCTATCAGGGAAGGGGTGATGGCTATAGAAAGGCTTTGATATGCTTTCTCACAAGTCGGTATCTTACATCCCGGTAGAGACAAGTGCACCCCATTTCATAGATGAGGAAATAGAGAGGTGTAAACACCACACTAGCAATACATCTGCTGATGCTCCGGATGGTCTTGATTGTCAAGTATCCATGGTGACAACAGCAATGATGACTGGGCCAGTGATATGGTTTAGCGGTTGGTGATGGTGGCGGCCATACTGATAGACAGGGATTTTCTAGGTGCAGTGGCACATGCATTAGTCCACTTGGGAGGCAGAGAGAAGCAAGTGGGTCCAGACCAGCCAGGGAGAATAGTGAGATCCGGTCTGGAAAAGGAAAGAAAATAAACAAACAAAACAAAGACAAAGAAAGCACAGGGAGATGCCTGGGGACAATATGCAGAGTGATGTCAGTGACGGGTGGCCACAGGGTGGAGGTGGGGAGGCTGCCATTGAGAGGCTCATAGCAGTCTCTGCACCCACAGGCTGGTATCCTCTGGGAATGTGGTATGGTGCTGGTAATACTGGTGACTGTGTCAGCCCAACTTTGTTGGTAGCACAGTGACAAGAGGGTGATGGGCTGCTCCCGTTGCAG
Seq C2 exon
ATGTGAAATTCCTGAACAACCACAGCCTCGTAAAGGACGCCCAGGAAAAGGCCAACGCTGCCCTGTTGGATTACACCTTGTGTCACTACCCACACTGCGGGGACAAATTCCAGCAGTTGCTATTGTGCCTGGTGGAGGTGCGGGCCCTGAGCATGCAGGCCAAGGAGTACCTGTACCACAAGCATTTGGGCAACGAGATGCCCCGCAACAACCTTCTCATTGAGATGCTGCAGGCCAAGCAGACTTGAGCCTGGGTGCCAGGCAGCGGGCAATAGGCAGGGATGCCACTGCCTCCAAAAGACTCCTTGCATTAGGTGATCCAGGAGCCCTGTCACTAAGCCCCTGCCCCTGAGCTCCAGAGCTGTGTGTTTGGGCAAGGATGGGCGGGGATTGGCCGGGGCAGGTTGCCTTTACTAGCCATTGGCCTGTGTCCGCCACTTGGAGTGCCCCAAAGGGGGCTTCTAACCATTCCTTCCTCCATCAGCCCCCAGCTTTTTTTCCTGGTATCTGAGGTCCCAGGAGGAGGCTCAGGATTCCCTGGTGGGTCTGGATGTCCCTTGGGTCAGAGGTCATCCTTTCCCTCTCTCCTGTTATCAGAGGCAAAGGAAGGTCTACAGGCATCAATGAGGGCAAAGGAGGGGGTCTCCAGACTCCACTGAAGCAGGAAGTCCACTGTTGTAAACTGAGTTTGCTAAATTGGGTCCCCAGAGGATACCATGAGAGTGGGTAGGGCAAAAAGAGCCCTTTCCGCCCTCTACCCATCTAATTCTGATCCTCTACCTGTAGGAGGACTTTGGTGTGATCATCCTTCTCCCAGGGCCCGGCTACCCAGGGAGGAGGAGTCTGGTGTAGCCAACATTCCTGCCCTAACCCTGCCCATCACCAGCTGGCTGGGCTGGTATTTATCTGCAAGGTTGAAGTCACTGGGATTCTTTTCCTTTCACCTAGATAGTCCTTGGAAAGTGTGTGAGAGAGAAGTGGGCAGGAGACAGACTGGGGACTGAGCTGGGATATGGGGACTAGCATCAAAGCTTTCTCCTGACATCTCTTTCCAAGAGTCGGGGTGGCATCTGTACCCCACCTCACCCCCGAGAAGTGCTATTGCTTGCCCTCTGCCTCAGCCCCACTAGGGGAACAACAGGAGGCCTGCTGGGGCTTAGAGTCCGTGCAGGTGGGGATATGGGTAAATCTAGGAGAACTCACAGATCTTTATATGAGGACAGTGCTGAGGACTTTCTCATGGCTCCATCCTTTTGGTCCCTCGCCACTACCCTTGAAGCTGGCTTCAGTTCCCTGGCTGCTGCTTTGCCTCCTGAAAGCCACTCTGTAGGACCAAGCACTCGGGGGAGAGGCCTAAGCCATCCTCTGTTCCAGACTGGACATCCACTGTCTTTCCTGCTTTCGCGTCAGATTTACAGCTTATGCTAGGCCCACCCAACTGGACAAGGCTGTCTCCTGTCTTCTACTACCCTGGCTCAGCCCCCACCTCTGCCCCTGAAATGCGTGCTCCCACCAAGGCCAGAGACCCACAGCCCCAAGACAAGAAGTGCCCTTATAAACCCCTGCAGCCCTGCAGCCCTGAAATAAATTTTGCAATTAGTTTCCAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026751:ENSMUST00000112883:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=FE(23.7=100)
A:
NA
C2:
PF0010425=Hormone_recep=PD(36.2=90.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types