HsaINT0115672 @ hg38
Intron Retention
Gene
ENSG00000136931 | NR5A1
Description
nuclear receptor subfamily 5 group A member 1 [Source:HGNC Symbol;Acc:HGNC:7983]
Coordinates
chr9:124481237-124491228:-
Coord C1 exon
chr9:124491081-124491228
Coord A exon
chr9:124483006-124491080
Coord C2 exon
chr9:124481237-124483005
Length
8075 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CCGAGAACCTCCCTTTGCAGATT
3' ss Score
6.59
Exon sequences
Seq C1 exon
GTGGAGCTGACCACAGTGGCCACCCAGGCGGGCTCGCTGCTGCACAGCCTGGTGTTGCGGGCGCAGGAGCTGGTGCTGCAGCTGCTTGCGCTGCAGCTGGACCGGCAGGAGTTTGTCTGCCTCAAGTTCATCATCCTCTTCAGCCTGG
Seq A exon
GTGAGTGCAGCTCCAGTGACAGAGAGGTGGAGACAGCCAGAGGCGGGTGGGTGGGAGGGTGGGTGAGGCTGGAGAGGTAGCCCTGCTGTGGCCAGAGTGGCCACGAAGGAGCCTCGGGGAGAAAGGACCCCTCCCTTACTCATTCAGTGAACAAAGGTCTGAGGGCCCCCGGCCAGGGCCTGGCTCTTAAATGGGGGCTGCTCCCGCTCTGGTGGCCCATGTGACTTTAGGATTTTTATTCCAGGCTCCCATCCTGGGGTCCCTGTTTTCTCTAATCCCTGGATCTAGGGGGCCCCAATTTTGACTGTACCTCCTGGGGGCCTGGACCCCTTTGCTCATGCACACGTGCATCCATTCATTGACTCTACAAACAGGCACCGAGAAATTGCACTGGAGAAGGCACTGGGAATACCGCTGTGAGCAAAAACCCCCCAAGCCCAGCCCTTGTGGTACTGACCTTCTCTAGGGGAGACAGATCATGAGCATAATATGATTAGTAAGACGTAGGTTCCTAACACGATTAGGCAGGCATAGCCAGGAAGGTTGTGACCAGTGCTAAGGAGGAAAAGAAAGCAGAGGAGAGGCAGAGAGCAGGCCTGGCCCAGCCCAGCCCGGCCACCCACCTCACTCCCCAAGCACTTGGGGGGTCTCCTTCCCGTTGCCCTCCTGACCCCAACCCTGCCTGGGCCACTCCAGTCTGCACCCTCACTCCCTGGAAAGCCATCACAAATGCCCTCCCCATGCCCAGAGATGCTGAGGACATAGCTGTCCCTTGCCAATCGTGAAAAGACCTACAGCCTGGGTGGTTAGGGCTGAGACAGAGAGATGGGTGTGGCTTAGGGAACCCTGGGTGGGGAGCAGAGCTCTTTCTGGAAGGCTTCCTGGAAGAGGGGCATCTGAGCAGGGTTTTGGAGGATGAGTAGGAGTTTTCTGGGGGAATGAATTATTTTGCAGTGATGCAGGTGGGATGGGATAGAGATGAGTGAGTGCTTCATCACCTGGAGAGGGGGCAGGATTAAGGTATTGTCTTGGTGGCTGGCATTATAGTCACAGTCTGCGAGGGGCATGCCTGCCAGAGAGAGGGAGGAGTGGGGAGTGGGGAGTGTTGTGGAGGCAGAGGGGATTAACGAAAAGTGGGAAGCCCAGTGCTTGGGTGGGATTGGTGACATCCTCCATGCCATGTGGCTGGGTGCAGTGGGCTGGGTCTCCCGATTCTGGCAGAACAGGCTGGTAACTGGAGGGCTTATCTGCAAGGCCACCTTAAGCCACCTCTCAGGACACCAGCCGGGGCTCTGCAGGGGTCAGCAGGGGACAGCCATTGGGGTGGGGGGCGGGTAGGATCTTGGGCAGCCAGTTAGGAGCTGTGGCCTGAAATCCTTACAGGAGCCTCAGGGACCCAGGCTCGGTTGGCTGCAGCTGGGGAAGCTCCCTCCTACCTCTGCCCGCAACGGCACCTTCCCCGCAGCCTGCCAGGCTCAGCAGACTGGCACAGGATAGAGTCACAGATGTGCGTGGTGGGGGTCTGTGTGGTTGGGGCGTGGAGCCTGCAGGAATTACGTGAACGTCTGTCTCTGCATGCGTGCGTGCTGGCATGTGCAAACGATGAACTTTCATACGCTTGTGGTTTCTGAAGTGTTAGCCTGTGTGAAGAGTTTGTGTGTGACTGGGGATGGACCGGGAGATCTGGGAACATGAGTAATTTGTGGGGAAGGGTGGTGCTTGGAGGCACCTAGAATTGGAGTGTGTGTCCGCGGGAGTCCGGGTGGTTTGTAAGGTGAGAGTTCTTGACCTGGCTGCCATCACAAGGCCACTGGGAGGGCCTTAAGGAGGGGTAGGTGGAGGGTGGGCTATCAGCCAGCAGGCTCCTTTGCCAGGGCTCTGTCTGTCCTTGGGTGTCCCCTGAAGGGCAGGGACATTGTCTTGGCCCCCAGCCCCTCTTCCCACCAAAGCCCTGTGCATAGCTCTGGCGGCTGCCGGGGGTGAATCCAGGACTTCTCCTTCTCTGGGACTTAAGGAAGATGGCAGAGCTGAGCCCTCTTCTCTTGGGTCCAGGTGTGGGCGTGCTCAAAACTGGAAGTGCCCCACCCTCATGTCATGCTGGTCATCAGCCTTTTTTTCCAGATGCAGCAGCTGAGGCCTGAGAGGTGGGAGAGGCTCCAGTGCTGGGCTGGAACAGGCTGAGTTGAGGGGAGAAGGGTGCGTGCGTGCGCACTCGTGCTGTGTGTGTGACAGAAGCAAGGTGGCACAGCGCTTAGGAAAGGGAACTAGGTGGGGATGAGGAGTGGATTCTAAATCTGGTCTCTGGTCTCTTTCTGGCTGTGTGCCCTTGGGCAAGTCACTCCCCTCTCTGAGCTTCTATTTCCCCCATCTGTAGAGTGACCCTCCTAGTAATCCCTAACTTGTTACAAGGATTAAATAAGAGAATTCCCCAAAGTGTCCCAGTGCTTGGCTGACCCCTGGGAAGTGTGTGTCGGAATTGTTTTAATCATAATCACCATTATTAAGTTAATGTGCATATGCGTAAGTGAAAGAATGAAGTGAATGAATGAAGCAGCTCACAGTCTCCATCTGTATCATTGTGTCTGGCACAGTGCCTTATCCTTGGGCACAGGAACATGGGTCTGGCTGATGTGGGTGGGTGAGCCCTGAGCCCAGCAGGCCAGGAACCTGGTGAGGTTGGGGGTGCCAGAGGAGGAACAGGAGGAGATTCCAGGACCCCAGCTGATGGCAAGCAGTGAGAGAGGGATGTAGGGGGCTGCAGAGGCCTTTGGCTGGCCAGTTCCAGGTTGGGAGAGGAACCCCATCAGTTCAGTGTGATCAGGGTTGGGTCAGAGGGGAGAAACCAGCACCACTTGGCTATCCGGGAAGGCTTCCGGGGGGTGGGGGCTCTGAGCTGGGCCTAGCAGTATGAATAGGAGCATTCTGGGTGAAAAAAAAACAAGCAGCACTAATAGCTTTCCAGACTCAAGGAACAGCTTGCACAAAGTTCTGGGGAATCCTGAAAGTTCTGTGTGGCTGCAGGGGTGGGGACGGGGTGGGGAGTAGGCTGGCGAGGGGACAGGAGCTGAGCTGTGCAAAGCCTTGAATGCCGGGGCCTGGTACCTTGAACTTTCCCTTAAGCAGGCAGTAACATGATGAAATTCGCATTTTATCAAGACCCTTCTAAGTGCAGCATGGGAAAAGGATGGCAGGCAGGCAGCCCAGAGCCCTGGCAGAGGCTAGACCTGGGGCTGGGCTGGAGCAGACTCCAGGGTCTGGAGCAGAGGTCTCCTCTCCTGATCCCACCCAGACCACCAGAGCTGGGGCTCCAGGGAAACTGGGACCCGGAGAGGGACCGCCACTTGCCAGCAGACCTCCAGCTGGCGCGCAGGGCGTCCCCCTCGGGGGCGGCTCCGCCCTGGGCCGGACAGCCTGGCCACGAGTGCTTGTGCTCCCCCACCTGCCCCACCGCCCTGCGGCTCACTCAGCGCCTCCTTCGCGCCTGCCTCCGCATAAGGGTGCCATTTGGTGTCTAAATAGCCGTCTCGGGAGGGCGCGGAGGCAGGTAAGGAGGTTTAATTAAAATTAGTGCCTCTCTCCTGGCAATCACGGTATTTATGAAGATGGGCCCGGCTGGCATTGTTCTGCCGAGGACTTAATCGAAGCTTAATGGATTGACCTAACATTCGATTTCCTGACTTCCATTGAGGCGGCGGCAGCAGCATTCCCTTAAGCGTTTGCAATTTACCCACTGCTCCGCGCCAACAAAAGGCGGCCTGAATAGCAGCCCCACTCGAGGGGCCATTGTGCGCGGGGGCGCCTGCCTGAGTTACCGCTATTGGGACAACATTCTTTATGCCTCGCTGGAATGAAAGGATTATTCAAATATTCAATTAAACCATGAAAAGGGGGCTTTTCTGAGAACCTGGGGGCCCCCAGCTCTGCAGAGCTAGCGGGCTGCTCTCCGAGGTGGGGGCTCCATCTCCCAGCTCCCTCCGACCTCCACCTCCGCGAGTGCCGGGAGCTGAGCGGGCTTGGGGGGCGCAGGCTCCTCTCCAACATGCCGGTCTCCAACCTTCGGGCGCCCAGGGCCCAGAGCTGGGCATGCAGATGAGAGCCAGCTCCTTGCCACCCTGTGAGGCAGAGATGAATTTTCCCCTGTTGTGCAGATGACAGGAAACTGCAGCTCAGAGAGGGGAAGTGACTTGCCCAAGGTCACCCAGCTGGTTGTAAAGCCGGGATCTGAACCCCTGACACATGAAGGGGGCGTCTCCAGGTTTGTTTGACCCCGCTCCCGTGTCTGCTGGAAGAACGGTGTGGTGTTCTGTGCGTTGCTGGCACCGTCACATGTGTTATCCGCTGGAATCTTCACAATGATCTCTTTAGAGACTGGGGGTTCAGGGAGGCTTGGGGAAGGGGAGTGACTTGTACAAGGTCTCCAGATGAGGAGGAAGGCAAGTCTAGAGTCCAGAGTAGCCTCTCTGGGGGAATCCTAGAACCCCAGGGGTGGGGGATCTCGGACAGAACTCATGGATGGCATGGGACATAAAGTTATGTCCAATCCCACAGGAACATGCATCCCAGCTTGACCCAGCTCCTGGGCAGGGGGCCCCAGTCCTGCTTGCCTATCATGGGAGACTTGGGCTTTGGTGTCAGAGAGACTTGGGTTTGAATCCAGGCTCTGGCACCTTGTGTGTCTTGAGGGGGCCCTGGTTCCCTGAGCCCTGGGGATGCACTGCCCTGCCTGTCTGGATGTCTGCTGAGATGAACCGAGCTGGGTGCAAGGTGCCTGGGGGGTGCCCGGGAAACTGGGTCTGGGCTTCTGGACTGTAGCCACTGAGGCTCCGTTAGCGACTGTGCTTCCCTCCCCCGGCCCTGTGGCTGACCTCTGGGGGCAGTCGGGGGTTTCCAACCTGCTGAGAGCTGGGAAGCCATAGAACTGCTGGGGGTGGGGGCATCCCTGAAACCTGTCCTCCTTCTGCACCCACCCCCGCACCCCCGCTTCGGTGTCCCTGGCGCAGTGCTGCTGAGAACAGTAAATCCCGGTAAAGCCGAGGCCCTGGTCTTCCCCAGCCCCCTCCCGCCCCTGCCCCTACTGCGGTATCCTGGCCGGTCCTCCCCACTCCAGCTGCTTCCTCCAGGACCCTTTACTGATGTGTGGCCTTGAGCTGGTCCCTGTCCCCCTCCGGACCCCCATTATGAATTGTCAGAAGAGAATGTCAGGAGACTTGCTCAGCCCAGGATGGTGGGGAGCGAAGGCAGATGGGACAGGGATGGGGCCAGCAGGAGCTCAGCTAGGTGACATGACTTCCCATGACCTTTGAATATGTCTGGGGCAGCCCAGGCTAGGGAGTAGGGCTGTTCCATACAGTTGGGCAGGTCATTCACTGCACAAGAGCACCTGGGCCAGGAGGCGTTGGGATGGATATAGCAGCATCTCTCTGGACAACGGGGAACTTCCATGTAATTGGCATAAAGGTGCCTTCAGGGTTAGTGGTGACCCTGGGGAAGTGAGGAAGAAAGTGCTCCTGGCTCGCTTCAGAAGGGAGGGTGAGGAGCCTGGGCTGGGCTGGGAGGATGGAGGCCAGGTCCTGCCGTCCACCCCCGGGCCCAGCTCCGGTTTCCCTAAATCCGACTTTGGACAACACAGGCCTCAGCAGGCGCGCTGGGGGCGGCCAGGGATCAGGGTTGCCAGGAGCGTGGCGCTCTCCTGGTGCAGCGGGTGTTAAGGGGGATTAGGGGGCCAGGGCTGCACATGCTGCCTCTGGACGCCCCCGCAGCTGCAGGGCTGGGGGTGATGGGGTGGAGGAGAAGTGGGTGGATGACCATTTTCTGAGCCACTGGTCACCCCATCCCAGGCAAGGCCAGGCTAGAATTTGAGGCCTGGGGACAGATTCTGTGGGTTCCTGCTGACCCTGTGCCCCCAGGCTGGGCACCTCCTAGAAATGCTGCCCAGGAGCTGAAAGAGGCCTGCAAGCTGTGACAGGAACTTGGGTGACAAGAAACTGACCCTGGCTCTCCCCCTCCAGGGAGGAGGAAGGCTGGTCAAGTCGGGGCGGGGCAGGTAGCATTGCACCTCAGCAGCGGCTGGGATTCGAATCCACGTCTGTCTCACTCCAAAGACATTTTACTTTCTGTCTCTTCACTGCACCTCGGGTGTGGCGGACACATCAGTTGCACTCCTCTGTTCAATCATTGGTGCACGCAGAGCCAAACCCCCTCCACCCCTCCCCAAAGGGAGCCCTTCCTTGATGTTTAATGCGGGTCGTCCTGTTTGCCCCTGTCTTCCCATGGCACGTCTGCTTTGTGTACAAGCTTTATTTATTTATTTATTTATTTATTTATTTAGAGACAGAGTCTTGCTCTGTTGCCCAGGCTGGAATGCAGTGGTGCAATCTCGGCTCACAGCAACCACCACCTCCCGGGTTCACCTGATTCACCAGCCTCAACCTCCCAAGTAGCTGGGATTACAGGTGCGCGCCACCATGCCTCGGTAATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGACCCACCTACCTTGGCCTCCCAAACTACTAGGATGACAGGTGTGAACCACTACGCCCGGCCAACAAGCATTTCTAGTTTATGTACATGGCTGAGCCTTATCGATCTCATCCTGACCTCCCTTCTGTGATTTTTGTTTTCCGCTCAGTCCCAGGCTTTGCCCTGCATTGTGTGGGCTCCCTGACTTCTGCCTATTGCACACGACTCCTTGGGGTGCGGTCACCACGTGGCCATCCAGGCCCCCTCCTTGCCACCATGAGCAGAGATGGCCCCTGACTCATGAGCTTTGGCTTAGGATTTTTTGACTTTACGGTGGTGTAGAAGTTGAAAAACATGCATTCCGCAGAAAGCATGCCTGGAGTACCCATGTAACCCTTCTGTTTTGCGTTTTCAGCATGGTGTTCAGTAAACCCCATGAGATGTTCAACGCTTTATTGTAAAATAGGCTTGCGTCAGGTGATTTTGCCAACTGTAGGGTAATGTGGTCTGAGCACATTTAAGGTAGGCCAGGCTGTGATGTGCAGCAGGTCAGGCATAGTAAATGCCTTCTGACTTACGATATTTTCAGCTTGCGATAGGTTAGCCAGGATGTCAGCGCATCTGCACTCCTGCAGTGAATGTGCATGCTCCCCCATGGCCCCATGAGAGTCCTTCCTGGGGGTACTGGAGCCTGTCTGTTGGTCATAGGGGAGACTAAAAGCACATGCCAGCTGTCCTCTAGAATGGGGCCACCAGTCCTCCTGCATTGCAGCATGAGATGGGATACTCCCACCCACAGTGCGCCTCTGTGGGCGTGGTGCTGATGGGGTGACAGTGGTGATGGTGGCAGAGTGGGGATGCGGATGGCAACGGTCATGGAGATGAGGCATCAGTGATGATGGAGACAAGATGGCTTTGATCGTGCCAGGGGGATGGTGTTGGTTATGGCAGCAATGGTTGGCCATGACGGCGGTGAGAGCAGCTCCCATTGTGATGGCATTATTGTGGTGCCAGCTAACCCAACCCACCGAGCTTCTCACGTGCCAGACACTGTTCTTCAGAGCACTTTCCACACAGCGGCTCCCTAAATTCTCAGGACAAGGTTGTGAAGTTGGTACTGTCGTCACGCCCATTTTACAGATGGGGGACCGAGAGGTTCAATAACTGCCCAGGGATCCTCCCCGAGGGAGGCTGGTGATGGGCTTCATAATTCTTGTTCATTGTGACCACTGTGGTGATGATGATGGCAGTGATGATGGTGACAGGTGACTGTGGTTGGGTGGTTGATGGTGGCGGTGGCCATGTTCATGAAAAACACAGGCATGTGGGTATTGGTGACGATGGTGGTGTTTGTCAACCAGGGTGACAGCAATGGTGATGGCGACACGGTGCCAACGGGGAGACCATGTTGCATGGTTGGTGGCAGCAATGCCCATGTCTTTGATGGTCATAGGGAAGGTGGTATTGGTGATGCTGGTGACGGTGTTGGCCCAGCCCTGATGGGCATGGATGGTGACGCGATGGTGACCGAGAACCTCCCTTTGCAG
Seq C2 exon
ATTTGAAGTTCCTGAATAACCACATCCTGGTGAAAGACGCTCAGGAGAAGGCCAACGCCGCCCTGCTTGACTACACCCTGTGCCACTACCCGCACTGCGGGGACAAATTCCAGCAGCTGCTGCTGTGCCTGGTGGAGGTGCGGGCCCTGAGCATGCAGGCCAAGGAGTACCTGTACCACAAGCACCTGGGCAACGAGATGCCCCGCAACAACCTGCTCATCGAAATGCTGCAAGCCAAGCAGACTTGAGCCTGGGCCGGGGGCGGGGCCGGGACTGGGGGCGGGACTGGGGGCGGGGCCTGGGCGGGGCCGCAGCCACACCGCTGGCTCCGCATGGTTCATTTTCTGATGCCCACCGAGGAGCCCCAGCCCCGTCCCAGAGGCCGCTGCCCCTGAGTTCTGACACTGTGTGTTTGGGAAGGTGGGTGAGGCTGGGCAGGGCCTGGCGGAGGTGGAGTGGCCACTGGCACTTGCCTGCTGCTTGGAGTGCCCCAAGGAGGTGGCTGTTAACCACCCGCCCCGCCCCCTCCCTGCTCCCAGCTCTCTCTCCTGGAGTCTGAAGCCTGCAGGTCCGGGGAGGAGGTTCGGGATTCCCTGGTGGGCCTCGACGTCCCTTGGATCAGAGGTCATCCCTTCCTCCTCTCCTGGAAACAGACAGGGAGAAGTTGAGCAGGTATCAACTAGGGGAGGAGAGAGGGTCTCCAGTGTTCCCCCCATAGAGACCAGGAGGGAGAGCCTCTGTTTTGTAAACTAAGGATAACCGAGTTTGCTAAATTGAGAGGGGCTATTGGGCCCTAGAGGACACTAGGAGACTGGTTAGGACAAAAAGACCTTCTCCCTAGCCCTTCTACCCCACCTGACCTCTGCAAGAGGGGGCATTGATACATCATCGGGAAAAAACTTTGCTCCAGGCATCACTGATTCCCTCTCCCACCCAAGGAGAACGTTTGGTACAATCGACATCCTAGCCCCACCCAGAGGTGGCCCTCCCAGGCTGGTATTTATCTGCAAGGTTGTAGTCAAGAGGTTTTTCTCCCCGCTTTTTGTTTTTAAGCTTCTAGACACTCCTTGAAATGTGTGTGTGATGGAGGGAAGGGGACAGATTTGAGGACTGAAGCTGGGGCTTGGGGATTGCCACTAAGTACAGCTGACGGTTTCTCCCCGGACACTCGCCTACTAAGTACCCTTGGGGTGGTGCTGGGTCATTACTTCTGAGCCCCAGCCCCAATCCAGAGAAGCGCTGTTGCCCGCCCTCCACCCACTAGGTGAACAGCAGGATGCCCTGTTGGGGGCTTCAGGTCTCTGTGGGTGGGAATGCAAGTGAACTTGGGAGGGGGCACGGGCCTGTAGATCAGGGATAGCGCTGTTGATCCCCTCTCTGTGGCTCCAACCCGTTGGGTCCCTTGCTGCAAACCCATGAAGCTGGCCCTCAGCTCCCTGACCCCCTGTCCTAGGTCATGAAGGACACTCTGCAGGGTGAAGCACCAGGGAGAGGCCTCGGCTGTCTCCTGTCCCCGGCGGGGTGCCTGCTGTCCGTCCCGCTTTCATGTTACTGTTGCAGCTTGTGCTGAGCCTGCCCAGTTGGAGGAGACTGGGCACCCCTGCCTCCTGCCTCCCGCCTCCCGCCACCCTGTCTCAGTACCTCCCCTCCCCGCCCCCTGAAACATGTGCCCCTGCCAAGGCCGGAGACCCACAGCCCTGAAACGAGAAGTGCCCTTAAGGATCACCCCAGCCCCCACAGCCCTGGAATAAATTTCGCAATTAGTTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136931:ENST00000373588:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(34.5=80.0)
A:
NA
C2:
PF0010425=Hormone_recep=PD(36.2=90.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development