RnoINT0103010 @ rn6
Intron Retention
Gene
ENSRNOG00000012682 | Nr5a1
Description
nuclear receptor subfamily 5, group A, member 1 [Source:RGD Symbol;Acc:68350]
Coordinates
chr3:22999616-23006507:-
Coord C1 exon
chr3:23006360-23006507
Coord A exon
chr3:23000513-23006359
Coord C2 exon
chr3:22999616-23000512
Length
5847 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
ATGGGCTGCTCCCGTTGCAGATG
3' ss Score
8.82
Exon sequences
Seq C1 exon
GTGGAGCTGAGCACGGTGGCTGTGCAGGCTGGCTCCCTGCTGCACAGCCTGGTGCTGCGGGCACAGGAGTTGGTGCTGCAGCTGCATGCCCTGCAACTGGACCGCCAGGAGTTTGTCTGTCTCAAGTTCCTCATCCTCTTCAGCCTCG
Seq A exon
GTGAGTGGCCTCTGGAGGCTCTGCAGTGGAGGGTGGTAAAGACATTGGGGTAGTACTGTGGTTAGAGAACCCAAGGGACAAGGATCCTCCTTTAGTGAGTGTTATAAGGGCACATGGCCAGGGTCTGGGTGCTCCCTGGAGGGCCATGGTTTCTCAGTGTGAAATCCCAAAGACCGAGATGTTGTCGGTGTTTTGCTTTTTATGGGGTGGAAACCTTTCTGAACATCTGATTTGTTTCTGACCAATCACGACAGAAATTGCTCTTCATACCCAGCACACTTAAATGCCTGCTGCGTTTAGGACTCTTTCTTCCCTGACTCCCATCCTGGGGTCCCTGTTTTCCCTAATTCCCTGAACTACAGGGACCCCCTGTAGTTCTGACGCTAGATCCCTTCTCCTGTACATTCATTCATTCATTCTGCAAACACCCGCTGAACACCTGCCTGGTGCCAGGGACTGGAGGCAACGTAGCCAATGGGAAAGACCCCAACTACTGCCCTCAGAGCCATGCACTTGGGGGAACAGCAAGTGTCTTATAAAGGGAGGAATACATAGATGGGGACTACATAGCAGCTAGATGCCACAGATATGAAGGTATGCCTCAGAGAGCCCAAGTCCTGGGATAGAAAGCTTGGAGGAGCCTTAGTGTATGAGTTGGATGGAAGATTCCGCAGCAGGGAAGCAGTTATGGGATGGGAGGGAAGAGAGAATGGAGACCTGTCTTTGCAGCAGTCTGGCAATGATGCTACCTAGAGTGTAGGAAGTATTTGGAAACAGAGAGAAGAAGGGAGCTGGAGAGAAAGCCCAGTACTCAGGCAGAGTTGGGCTACTTGCCACATCCATGTGGCAAGGGACAAGGGCCTGGGGACTCTCAGCCTGGCTAGTGCTCTAGAGAGTGTTAGGAAATGACCACAATGAAGTAGCCACCTTAGAGTGTAGCACAGCCTTAGGGGCCCTGGTCAGGATTGGGAGAATCTTGGGTGGGGGTGCTCAGCAAAGAGGACCTCTCAGCACCAGTCAGAGCCCCAGCATGACTCCCTTAAGGGAGCCCCACAGTCCCCTTTCTCCTACAGCCAAAGCTACTAGGTCCAGTTGGATGCTGGCCTCCCTATTTCTCTAGGGGCTAGGCTCAGTGGTGCCTTGACTTGGGGCAGTTCAGAGCCACCCTCCCAGCCCATATGCTAACTTCCCCTCCAGTAACTTGGAGAGATCAGTGCTAGAGTGGGGAGCATGGGAAGAGTCTCTGTATAAGTACATGGCTGCCTGGTTTCTACTCTGATCCCTCTGGCTTTGTGCAATTGAGCAAGTCACTCTCCAAGCCTCTATTTCCCCATGTGTGAAATGACATCCGTAAGTGTCCTTGACATACTGCAAGGGTACAATGAGGTAATTCTACCACGATCTTGGCCCTCAGAAGCATGTACTGATGTTCTTTATTAATCATCCTTATTAAGTCCATAACCAGATGAGCCAGAGTGACTGAACTAACCAGGCCACAGGCTCAGTCTTTATTAATGGTTTGTGTCTGGCTGAGGGCTTTATTGTCTCGGGTCTGGCCATGGTGTCTGAGGAGTTCTTAGCTCGGTGGGCCTGAAGTTGAGTTGAGGTTAGGGATGTCAGAGGCACAGGAGACAGTGATTCTGGGACCTCAACCTACTGGAGCCTAGAATGAGGGAACAATGACAGACACACACTGGGGCACAGAGTCCTTGGAAAGAGGCTTCAAGTTGGGATAGGAGGTGAGCAGTCCAGTATGACCAGAGTCGGGGCAACCCTACTGGGTTGGGATGCAGGATGAGGTGCGTACATCTGAGCTGGGCCTTGCAGTGTGAATAGGAGTGTTCTGGTGAAACAAGCAGAAGAAGCAGCCTGTTGGAAGTTATGGGGAGGGGAATGGGTGGAGAGGAGTCCACAAGGTAGACCCAGGATGAACTGTGCATGACCTCGGTTATTGGGCACCTTGAGCCTTCCTCTGGAATGGATCCCACTCTGGGGATAACCTGACCACCTCACATTTGCATATCACCATCTAAGGCCCTTCCGGCTCCAGCCTGGGGTAGGATAGTAGGTTGATAGCTCAGAGCCCTGCAGCAGGCAACTCCTGTATTTGGGTGATGGTGGATGGCCCTCTGACTCTGAAATGCAGGGCTCCTCGTCAGAGCTGAGCTTTCAGGAAAACTAGAACTCAAGGCAGGGCTGGTCACCTGTCCACAGACTTCCAGTCCGCCTGCTCGTGGCACCCTCAGCATCACCGCCCTGGGCTGGGCCGCCTCAAACCCAGGCAGTAACTGTCACCCACCCCCCACCCTGTCCCCCTCTACACACCTCCTTCTCGCCTGTCTCTGCAGAAGGGTGCCATTTGGCGTCTAAATAGCATCTCAGGCAGCTCAGAGGCAGGTAAGGAGGCTTAATTAAAATTAGTGCCTCTCTCCTGGCAATCGCAGTGTTTATGAAGATGGGCCCGGCCGGCATTGTTCCGCCGAGGACTTAATCGAAGCTTAATGGATTGACCTAACATTCGATTTCCTGATTCCCATTGAGGTGCACGGCAGCATTCCCTTAAGCGTTTGCAATTTACCCACCGCTCCAAGCCAACAAAAGACGGACTGAATAGCAGTGCCACTCGAGGGGCCATTGTGAGCGGGGGCGCCTGCCTGAGTCACTGCTATTGGGACAACATTCTTTATGCCTCGCTGGAATGAAAGGATTATTCAAATATTCAATTAAACCGTGAAAAGGGGGCTTTTCTGAGATCCTGGGGGCCCCCAGCTCATGGAGCTAGCGGCTGCTCCCAGGGTGGGGTGCCATCTCCCATCCCCTCCACCTCCAGGGATGTGGGCAGCACTGTCTGTCCTGCAGGCTCAGGCCCCAAGCTGGTACTCGGCAAGGGTCCCAGTCCTGACCTGCCCCATCTTATAAAAGATAGGTTCCGAGGTGGCGTCTGGTTGCAGAGCTGGGGTGTGAACCCCTTGACATGCAAAGGGGGAATCTCCAGGTTGCGGGATGATCCCTGTTCCCGAATCTGAGGGCATGCTCAGTGTTGCATGGCTGTCTTCCGTCCCTTAGACTGAGTGAGCTCAGGAAGTTGGAGAAGAGAGGTAAACTGATCTAAGCTTTCCAGGTGAGGGAAAACTTAGGTTTAAAGTCAGACCCAGGGTGGGATCTTAGAGAAAATCCGGTAGGTTGCAGAGAACCTGGTTCTAAAGCCTTCCAGCTCTGGGAATCCCAGCCCCGCCCTGCCCGCAGCAGGCAGTCCTGCAGCTCCTAGCGTGGGTCTGAATCCTGCCCTGCTGTGTGGGTGGTCTAGGCACACTCGGATGCACTTCTTGCAGTCTAGACATCTCAAGGGATGAACAGGCCTGGTGCCATGAAAAGGATCCCAGCTCTGGTCTATGGCCACTGTGTCTGTCTATCCACCCCATAGCTGCCTCCATGCTCCAGGGCCATGGAGGCCTTAATATGTGGGGACTGAGAGTCCAGAGGCTTTTCTACAGAGGTGCTGACCCTGAAAAGTTGTCCTTGCCCTGCACCCTCCCCCTTTCTACTCCACTGTCATCCTGAGTCCCTGATGCTTGTTGCTGAGAACAGTAAATCCTGGTAAAGCTAGAAGCCTAGGCCCTGGTGTCACCATTCCTTCTATCTGAGCAGCACCCTGGCCCATCCTCCTCCCCCTCATCTCTTTCCTCTGGGCCCCTTTACTGGGTAGCTTTGAGATAGACCCCATCTTTCATCTATTAAGAATGTCAGAATAACCCAGGGATGGGAAAGGGTTGGGGCAAGGACGGATGGGATCAGTAGACCTCTCTTGCTTCCAGGAGGCATTCTTGGTGCAATGACTTCCAGCGATCACCACTGAATGTACCTGGAGCCAGTCAGGCTAGCGAGCTGGGTTGCTCTGTCCAGTTGGGTGGGTTTCGCTGTACAGAGGCAGAGAAGGAAGGACTGGGCTGGAATCTAAGAGTCCCTCTCTAGACAGAAGGAGCTTTTCTTTTCCCCTAAAGGGCATAAAGGTGTCTGTGAGCTGGTGGTCATCCCACAGAAAGAGGAAGAAAATTACCCTAACTCACTTACTGCAGAGTGATGGGAGTCAGGGCAGAAGCTGGCAGCGACCAAATCCTGCCATACGACTCAGGCCCAGCTCCAGTTTCCCTAAATCCATCTTCGGACAACACAGGCCTCGGCGGGTCTGCTGGGGGCGGCTGGGGATCAGGGTTGCCAAGCACCTCAGCTTTCCTGGCGCAGTGGGTGTTAAGAGGGATTAGAGGGCCAGGAGCACATGCTGGCCAAACTCCCCCACAGTGGAAAGACTGGGGGGTACCTACCCCAAGGGAAGAAAGCAGTGAGGGACCCATCTTGTGAACCTCTGGAAGCAACAGAACCCAGAGGAGGCCAGGTTAGGCTTTGAGGGCTGGGGAGCTGATGTTAATTAAACTCCTAGGCAGGGCATGAGCTGTTAGAGGCCGAGGGCTGTGACAGGGGCTTGAGGAAGGGACCCAGACATCCTATTTCCAGCCCGCTTCCCTGAGGGAAGGGACCTTTTAAGCGGGACAGACAGGGACTCTCCCACGGAGTAGCTTCCTCAACCAACTCCGAAGGCCTCTTTTGTGTTAAGGCCCAAGGATGCGCACTGTTCGTGCTCCAGCCCCAGTCGCATTTGGTCCACATGGAGCCACCTGCTCCTCGCCCTCTCACTGGGAGCTGGCCCTCCATGTCTATCTGTAGCTTCGTGGCCCCCATTGTTCTCACACAGCATGTCTGTATGGAGAGAGCTAGTGGGCCAGCCTGCCTGCCTGCTCACCCTCTCGCCTGCCTTCTTCTCACCCTCCCCCAGCCCTCCCTTTTCATGTTTTAATAGTTTAAGGGATAGAACCAGGGCCTGTGTGTGCCAGGCCAACGGTGTGCTCTAAGCCACTCCTGACCTCAGTGCCATTTTAAATTTATGTAAATGGCTTTGCCTTGCAAACCTTTGGTTCTTCCCACTCTCTTACCTCCCACTCTGCCTTGCTTTTCAACATGGCCCCACGGGCTCTGGGTGTATCCATTCCACAACTTCCCAGATGTAACTGACATACACCCACCCAGGCCCCTCTTCCTCACCACGAATAATGCTGCCAAGAGGCTGACCCCAGAGCCCCATGACTGAATTTATGGAGCCTCTTTCCAGGGTGCCCATGCCGAGAGTGCCCATGGGTCTGGCACCCTTAGACGGGTCCTTTGGACAGTGATGCTGATGACGATGTCTATCAGGGCAGGAGTGATGGCCACAGAAAGGCTTTGCTAGGGACCAGTTCACCCCATTTCATAGATGAGAAAATAGAGAGGTGTGAACACCACAGTGGCGATGCATCTGCTGATGTTCCTGATGGTCCTAGTTGTCAAGTATCCACAGTGACAACATCGAGGATGACCGGGCCAGTGATATGGCTTAGTGGTTGGTGAGGGCGGTGGCCATAGTGGTGATTCTATATAGGAATTTTTTAGGTGTGGTGGCACATGCCCTTAATTTACTTAGGAGGTAGAAAGAAGCAGGGGATCTCTGTGAGGTCCAGGCCAGCCAGGGAGACACGGTGAGATCCTGTCTCAAAAAGAAAGAAAACAAACAAACACTAAAACCCCCAAAAGACAAAGAAAGCACAGGGAGAAGCTTGGAGATGGTGTGCAAAGTGATGCCAGTGGTGGTGGCCACAGGGTGCAGATGGGAAGGTTGCCATCGAGAGGCTTATAGCAGTCTCTGCACCTACAGGTTGGTATCCCCTGGGAATGTGGTGTTGGTAATGCGGGTGACTGTGTCAGCCCAACTTTGTGGGTAGATGGTGACAAGAGGGTGATGGGCTGCTCCCGTTGCAG
Seq C2 exon
ATGTGAAATTCCTGAACAACCACAGCCTGGTAAAGGACGCCCAGGAGAAGGCCAACGCCGCCCTGCTGGATTACACCTTGTGTCACTACCCACACTGCGGGGACAAATTCCAGCAGTTGCTATTGTGCCTGGTGGAGGTGCGGGCACTGAGCATGCAGGCCAAGGAGTATCTGTACCATAAGCATTTGGGCAACGAGATGCCCCGCAACAACCTTCTCATTGAGATGCTGCAGGCCAAGCAGACTTGAGCCTGGGTGCCAGGCAGCGGGCAGTAGGCAGGGATGCCACTGCCTCCAAAAGACTCCTTGCATTAGGTGATCCAGGAGCCCTGTCCCTAAGCCCCTGCCCCTGAGCTCCAGAGCTGTGTGTTTGGGATGATGGGCAAGGATGGGCGGGGACTGCCCGGGACAGGTTGCCTTCGCTAGCCACTGGCATGTGTCTGCCACTTGGAGTGCCCCAGAGGGGTGACTTCTAACCACTCCTTCCTCCGTCTGCCCCCAGCTTTTTTTCCTGGTATCTGAGGTCCCAGGAGGAGGCTTGGGATTCCTTGGTGGGCCTGAATGTCTGTTGGGTCAGAGGTCATCCTTTCCCTCTCTCCTGTGATCAGAGGCAGAGGAAGGTCTGTAGGCATCAATGAAGGCAGGGGAGGGGGGGTCTCCAGACTCCCCTGAAGCAGGGAAGGAAGTCCACTATTGCAAACTGAGTTTGCTAAATTGGGTCTCTAGAGGACACCATGAGAGCGGATAGGGCAAAAAGACCCCCTCCAGCCCCCCCCCCCCATCTAATTCTGATCCACTCCCTGGAAAGGGACTTTGTTGTGATCATCCTTTTCCTGCATCCCAGCTACCCAAGGAGGAGGAGGAGTCTGGCCCTGCCCTCCACCAGCTGGCTGGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012682:ENSRNOT00000017651:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=FE(23.7=100)
A:
NA
C2:
PF0010425=Hormone_recep=PD(36.2=90.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]