HsaINT0115672 @ hg19
Intron Retention
Gene
ENSG00000136931 | NR5A1
Description
nuclear receptor subfamily 5, group A, member 1 [Source:HGNC Symbol;Acc:7983]
Coordinates
chr9:127243515-127253507:-
Coord C1 exon
chr9:127253360-127253507
Coord A exon
chr9:127245285-127253359
Coord C2 exon
chr9:127243515-127245284
Length
8075 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CCGAGAACCTCCCTTTGCAGATT
3' ss Score
6.59
Exon sequences
Seq C1 exon
GTGGAGCTGACCACAGTGGCCACCCAGGCGGGCTCGCTGCTGCACAGCCTGGTGTTGCGGGCGCAGGAGCTGGTGCTGCAGCTGCTTGCGCTGCAGCTGGACCGGCAGGAGTTTGTCTGCCTCAAGTTCATCATCCTCTTCAGCCTGG
Seq A exon
GTGAGTGCAGCTCCAGTGACAGAGAGGTGGAGACAGCCAGAGGCGGGTGGGTGGGAGGGTGGGTGAGGCTGGAGAGGTAGCCCTGCTGTGGCCAGAGTGGCCACGAAGGAGCCTCGGGGAGAAAGGACCCCTCCCTTACTCATTCAGTGAACAAAGGTCTGAGGGCCCCCGGCCAGGGCCTGGCTCTTAAATGGGGGCTGCTCCCGCTCTGGTGGCCCATGTGACTTTAGGATTTTTATTCCAGGCTCCCATCCTGGGGTCCCTGTTTTCTCTAATCCCTGGATCTAGGGGGCCCCAATTTTGACTGTACCTCCTGGGGGCCTGGACCCCTTTGCTCATGCACACGTGCATCCATTCATTGACTCTACAAACAGGCACCGAGAAATTGCACTGGAGAAGGCACTGGGAATACCGCTGTGAGCAAAAACCCCCCAAGCCCAGCCCTTGTGGTACTGACCTTCTCTAGGGGAGACAGATCATGAGCATAATATGATTAGTAAGACGTAGGTTCCTAACACGATTAGGCAGGCATAGCCAGGAAGGTTGTGACCAGTGCTAAGGAGGAAAAGAAAGCAGAGGAGAGGCAGAGAGCAGGCCTGGCCCAGCCCAGCCCGGCCACCCACCTCACTCCCCAAGCACTTGGGGGGTCTCCTTCCCGTTGCCCTCCTGACCCCAACCCTGCCTGGGCCACTCCAGTCTGCACCCTCACTCCCTGGAAAGCCATCACAAATGCCCTCCCCATGCCCAGAGATGCTGAGGACATAGCTGTCCCTTGCCAATCGTGAAAAGACCTACAGCCTGGGTGGTTAGGGCTGAGACAGAGAGATGGGTGTGGCTTAGGGAACCCTGGGTGGGGAGCAGAGCTCTTTCTGGAAGGCTTCCTGGAAGAGGGGCATCTGAGCAGGGTTTTGGAGGATGAGTAGGAGTTTTCTGGGGGAATGAATTATTTTGCAGTGATGCAGGTGGGATGGGATAGAGATGAGTGAGTGCTTCATCACCTGGAGAGGGGGCAGGATTAAGGTATTGTCTTGGTGGCTGGCATTATAGTCACAGTCTGCGAGGGGCATGCCTGCCAGAGAGAGGGAGGAGTGGGGAGTGGGGAGTGTTGTGGAGGCAGAGGGGATTAACGAAAAGTGGGAAGCCCAGTGCTTGGGTGGGATTGGTGACATCCTCCATGCCATGTGGCTGGGTGCAGTGGGCTGGGTCTCCCGATTCTGGCAGAACAGGCTGGTAACTGGAGGGCTTATCTGCAAGGCCACCTTAAGCCACCTCTCAGGACACCAGCCGGGGCTCTGCAGGGGTCAGCAGGGGACAGCCATTGGGGTGGGGGGCGGGTAGGATCTTGGGCAGCCAGTTAGGAGCTGTGGCCTGAAATCCTTACAGGAGCCTCAGGGACCCAGGCTCGGTTGGCTGCAGCTGGGGAAGCTCCCTCCTACCTCTGCCCGCAACGGCACCTTCCCCGCAGCCTGCCAGGCTCAGCAGACTGGCACAGGATAGAGTCACAGATGTGCGTGGTGGGGGTCTGTGTGGTTGGGGCGTGGAGCCTGCAGGAATTACGTGAACGTCTGTCTCTGCATGCGTGCGTGCTGGCATGTGCAAACGATGAACTTTCATACGCTTGTGGTTTCTGAAGTGTTAGCCTGTGTGAAGAGTTTGTGTGTGACTGGGGATGGACCGGGAGATCTGGGAACATGAGTAATTTGTGGGGAAGGGTGGTGCTTGGAGGCACCTAGAATTGGAGTGTGTGTCCGCGGGAGTCCGGGTGGTTTGTAAGGTGAGAGTTCTTGACCTGGCTGCCATCACAAGGCCACTGGGAGGGCCTTAAGGAGGGGTAGGTGGAGGGTGGGCTATCAGCCAGCAGGCTCCTTTGCCAGGGCTCTGTCTGTCCTTGGGTGTCCCCTGAAGGGCAGGGACATTGTCTTGGCCCCCAGCCCCTCTTCCCACCAAAGCCCTGTGCATAGCTCTGGCGGCTGCCGGGGGTGAATCCAGGACTTCTCCTTCTCTGGGACTTAAGGAAGATGGCAGAGCTGAGCCCTCTTCTCTTGGGTCCAGGTGTGGGCGTGCTCAAAACTGGAAGTGCCCCACCCTCATGTCATGCTGGTCATCAGCCTTTTTTTCCAGATGCAGCAGCTGAGGCCTGAGAGGTGGGAGAGGCTCCAGTGCTGGGCTGGAACAGGCTGAGTTGAGGGGAGAAGGGTGCGTGCGTGCGCACTCGTGCTGTGTGTGTGACAGAAGCAAGGTGGCACAGCGCTTAGGAAAGGGAACTAGGTGGGGATGAGGAGTGGATTCTAAATCTGGTCTCTGGTCTCTTTCTGGCTGTGTGCCCTTGGGCAAGTCACTCCCCTCTCTGAGCTTCTATTTCCCCCATCTGTAGAGTGACCCTCCTAGTAATCCCTAACTTGTTACAAGGATTAAATAAGAGAATTCCCCAAAGTGTCCCAGTGCTTGGCTGACCCCTGGGAAGTGTGTGTCGGAATTGTTTTAATCATAATCACCATTATTAAGTTAATGTGCATATGCGTAAGTGAAAGAATGAAGTGAATGAATGAAGCAGCTCACAGTCTCCATCTGTATCATTGTGTCTGGCACAGTGCCTTATCCTTGGGCACAGGAACATGGGTCTGGCTGATGTGGGTGGGTGAGCCCTGAGCCCAGCAGGCCAGGAACCTGGTGAGGTTGGGGGTGCCAGAGGAGGAACAGGAGGAGATTCCAGGACCCCAGCTGATGGCAAGCAGTGAGAGAGGGATGTAGGGGGCTGCAGAGGCCTTTGGCTGGCCAGTTCCAGGTTGGGAGAGGAACCCCATCAGTTCAGTGTGATCAGGGTTGGGTCAGAGGGGAGAAACCAGCACCACTTGGCTATCCGGGAAGGCTTCCGGGGGGTGGGGGCTCTGAGCTGGGCCTAGCAGTATGAATAGGAGCATTCTGGGTGAAAAAAAAACAAGCAGCACTAATAGCTTTCCAGACTCAAGGAACAGCTTGCACAAAGTTCTGGGGAATCCTGAAAGTTCTGTGTGGCTGCAGGGGTGGGGACGGGGTGGGGAGTAGGCTGGCGAGGGGACAGGAGCTGAGCTGTGCAAAGCCTTGAATGCCGGGGCCTGGTACCTTGAACTTTCCCTTAAGCAGGCAGTAACATGATGAAATTCGCATTTTATCAAGACCCTTCTAAGTGCAGCATGGGAAAAGGATGGCAGGCAGGCAGCCCAGAGCCCTGGCAGAGGCTAGACCTGGGGCTGGGCTGGAGCAGACTCCAGGGTCTGGAGCAGAGGTCTCCTCTCCTGATCCCACCCAGACCACCAGAGCTGGGGCTCCAGGGAAACTGGGACCCGGAGAGGGACCGCCACTTGCCAGCAGACCTCCAGCTGGCGCGCAGGGCGTCCCCCTCGGGGGCGGCTCCGCCCTGGGCCGGACAGCCTGGCCACGAGTGCTTGTGCTCCCCCACCTGCCCCACCGCCCTGCGGCTCACTCAGCGCCTCCTTCGCGCCTGCCTCCGCATAAGGGTGCCATTTGGTGTCTAAATAGCCGTCTCGGGAGGGCGCGGAGGCAGGTAAGGAGGTTTAATTAAAATTAGTGCCTCTCTCCTGGCAATCACGGTATTTATGAAGATGGGCCCGGCTGGCATTGTTCTGCCGAGGACTTAATCGAAGCTTAATGGATTGACCTAACATTCGATTTCCTGACTTCCATTGAGGCGGCGGCAGCAGCATTCCCTTAAGCGTTTGCAATTTACCCACTGCTCCGCGCCAACAAAAGGCGGCCTGAATAGCAGCCCCACTCGAGGGGCCATTGTGCGCGGGGGCGCCTGCCTGAGTTACCGCTATTGGGACAACATTCTTTATGCCTCGCTGGAATGAAAGGATTATTCAAATATTCAATTAAACCATGAAAAGGGGGCTTTTCTGAGAACCTGGGGGCCCCCAGCTCTGCAGAGCTAGCGGGCTGCTCTCCGAGGTGGGGGCTCCATCTCCCAGCTCCCTCCGACCTCCACCTCCGCGAGTGCCGGGAGCTGAGCGGGCTTGGGGGGCGCAGGCTCCTCTCCAACATGCCGGTCTCCAACCTTCGGGCGCCCAGGGCCCAGAGCTGGGCATGCAGATGAGAGCCAGCTCCTTGCCACCCTGTGAGGCAGAGATGAATTTTCCCCTGTTGTGCAGATGACAGGAAACTGCAGCTCAGAGAGGGGAAGTGACTTGCCCAAGGTCACCCAGCTGGTTGTAAAGCCGGGATCTGAACCCCTGACACATGAAGGGGGCGTCTCCAGGTTTGTTTGACCCCGCTCCCGTGTCTGCTGGAAGAACGGTGTGGTGTTCTGTGCGTTGCTGGCACCGTCACATGTGTTATCCGCTGGAATCTTCACAATGATCTCTTTAGAGACTGGGGGTTCAGGGAGGCTTGGGGAAGGGGAGTGACTTGTACAAGGTCTCCAGATGAGGAGGAAGGCAAGTCTAGAGTCCAGAGTAGCCTCTCTGGGGGAATCCTAGAACCCCAGGGGTGGGGGATCTCGGACAGAACTCATGGATGGCATGGGACATAAAGTTATGTCCAATCCCACAGGAACATGCATCCCAGCTTGACCCAGCTCCTGGGCAGGGGGCCCCAGTCCTGCTTGCCTATCATGGGAGACTTGGGCTTTGGTGTCAGAGAGACTTGGGTTTGAATCCAGGCTCTGGCACCTTGTGTGTCTTGAGGGGGCCCTGGTTCCCTGAGCCCTGGGGATGCACTGCCCTGCCTGTCTGGATGTCTGCTGAGATGAACCGAGCTGGGTGCAAGGTGCCTGGGGGGTGCCCGGGAAACTGGGTCTGGGCTTCTGGACTGTAGCCACTGAGGCTCCGTTAGCGACTGTGCTTCCCTCCCCCGGCCCTGTGGCTGACCTCTGGGGGCAGTCGGGGGTTTCCAACCTGCTGAGAGCTGGGAAGCCATAGAACTGCTGGGGGTGGGGGCATCCCTGAAACCTGTCCTCCTTCTGCACCCACCCCCGCACCCCCGCTTCGGTGTCCCTGGCGCAGTGCTGCTGAGAACAGTAAATCCCGGTAAAGCCGAGGCCCTGGTCTTCCCCAGCCCCCTCCCGCCCCTGCCCCTACTGCGGTATCCTGGCCGGTCCTCCCCACTCCAGCTGCTTCCTCCAGGACCCTTTACTGATGTGTGGCCTTGAGCTGGTCCCTGTCCCCCTCCGGACCCCCATTATGAATTGTCAGAAGAGAATGTCAGGAGACTTGCTCAGCCCAGGATGGTGGGGAGCGAAGGCAGATGGGACAGGGATGGGGCCAGCAGGAGCTCAGCTAGGTGACATGACTTCCCATGACCTTTGAATATGTCTGGGGCAGCCCAGGCTAGGGAGTAGGGCTGTTCCATACAGTTGGGCAGGTCATTCACTGCACAAGAGCACCTGGGCCAGGAGGCGTTGGGATGGATATAGCAGCATCTCTCTGGACAACGGGGAACTTCCATGTAATTGGCATAAAGGTGCCTTCAGGGTTAGTGGTGACCCTGGGGAAGTGAGGAAGAAAGTGCTCCTGGCTCGCTTCAGAAGGGAGGGTGAGGAGCCTGGGCTGGGCTGGGAGGATGGAGGCCAGGTCCTGCCGTCCACCCCCGGGCCCAGCTCCGGTTTCCCTAAATCCGACTTTGGACAACACAGGCCTCAGCAGGCGCGCTGGGGGCGGCCAGGGATCAGGGTTGCCAGGAGCGTGGCGCTCTCCTGGTGCAGCGGGTGTTAAGGGGGATTAGGGGGCCAGGGCTGCACATGCTGCCTCTGGACGCCCCCGCAGCTGCAGGGCTGGGGGTGATGGGGTGGAGGAGAAGTGGGTGGATGACCATTTTCTGAGCCACTGGTCACCCCATCCCAGGCAAGGCCAGGCTAGAATTTGAGGCCTGGGGACAGATTCTGTGGGTTCCTGCTGACCCTGTGCCCCCAGGCTGGGCACCTCCTAGAAATGCTGCCCAGGAGCTGAAAGAGGCCTGCAAGCTGTGACAGGAACTTGGGTGACAAGAAACTGACCCTGGCTCTCCCCCTCCAGGGAGGAGGAAGGCTGGTCAAGTCGGGGCGGGGCAGGTAGCATTGCACCTCAGCAGCGGCTGGGATTCGAATCCACGTCTGTCTCACTCCAAAGACATTTTACTTTCTGTCTCTTCACTGCACCTCGGGTGTGGCGGACACATCAGTTGCACTCCTCTGTTCAATCATTGGTGCACGCAGAGCCAAACCCCCTCCACCCCTCCCCAAAGGGAGCCCTTCCTTGATGTTTAATGCGGGTCGTCCTGTTTGCCCCTGTCTTCCCATGGCACGTCTGCTTTGTGTACAAGCTTTATTTATTTATTTATTTATTTATTTATTTAGAGACAGAGTCTTGCTCTGTTGCCCAGGCTGGAATGCAGTGGTGCAATCTCGGCTCACAGCAACCACCACCTCCCGGGTTCACCTGATTCACCAGCCTCAACCTCCCAAGTAGCTGGGATTACAGGTGCGCGCCACCATGCCTCGGTAATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGACCCACCTACCTTGGCCTCCCAAACTACTAGGATGACAGGTGTGAACCACTACGCCCGGCCAACAAGCATTTCTAGTTTATGTACATGGCTGAGCCTTATCGATCTCATCCTGACCTCCCTTCTGTGATTTTTGTTTTCCGCTCAGTCCCAGGCTTTGCCCTGCATTGTGTGGGCTCCCTGACTTCTGCCTATTGCACACGACTCCTTGGGGTGCGGTCACCACGTGGCCATCCAGGCCCCCTCCTTGCCACCATGAGCAGAGATGGCCCCTGACTCATGAGCTTTGGCTTAGGATTTTTTGACTTTACGGTGGTGTAGAAGTTGAAAAACATGCATTCCGCAGAAAGCATGCCTGGAGTACCCATGTAACCCTTCTGTTTTGCGTTTTCAGCATGGTGTTCAGTAAACCCCATGAGATGTTCAACGCTTTATTGTAAAATAGGCTTGCGTCAGGTGATTTTGCCAACTGTAGGGTAATGTGGTCTGAGCACATTTAAGGTAGGCCAGGCTGTGATGTGCAGCAGGTCAGGCATAGTAAATGCCTTCTGACTTACGATATTTTCAGCTTGCGATAGGTTAGCCAGGATGTCAGCGCATCTGCACTCCTGCAGTGAATGTGCATGCTCCCCCATGGCCCCATGAGAGTCCTTCCTGGGGGTACTGGAGCCTGTCTGTTGGTCATAGGGGAGACTAAAAGCACATGCCAGCTGTCCTCTAGAATGGGGCCACCAGTCCTCCTGCATTGCAGCATGAGATGGGATACTCCCACCCACAGTGCGCCTCTGTGGGCGTGGTGCTGATGGGGTGACAGTGGTGATGGTGGCAGAGTGGGGATGCGGATGGCAACGGTCATGGAGATGAGGCATCAGTGATGATGGAGACAAGATGGCTTTGATCGTGCCAGGGGGATGGTGTTGGTTATGGCAGCAATGGTTGGCCATGACGGCGGTGAGAGCAGCTCCCATTGTGATGGCATTATTGTGGTGCCAGCTAACCCAACCCACCGAGCTTCTCACGTGCCAGACACTGTTCTTCAGAGCACTTTCCACACAGCGGCTCCCTAAATTCTCAGGACAAGGTTGTGAAGTTGGTACTGTCGTCACGCCCATTTTACAGATGGGGGACCGAGAGGTTCAATAACTGCCCAGGGATCCTCCCCGAGGGAGGCTGGTGATGGGCTTCATAATTCTTGTTCATTGTGACCACTGTGGTGATGATGATGGCAGTGATGATGGTGACAGGTGACTGTGGTTGGGTGGTTGATGGTGGCGGTGGCCATGTTCATGAAAAACACAGGCATGTGGGTATTGGTGACGATGGTGGTGTTTGTCAACCAGGGTGACAGCAATGGTGATGGCGACACGGTGCCAACGGGGAGACCATGTTGCATGGTTGGTGGCAGCAATGCCCATGTCTTTGATGGTCATAGGGAAGGTGGTATTGGTGATGCTGGTGACGGTGTTGGCCCAGCCCTGATGGGCATGGATGGTGACGCGATGGTGACCGAGAACCTCCCTTTGCAG
Seq C2 exon
ATTTGAAGTTCCTGAATAACCACATCCTGGTGAAAGACGCTCAGGAGAAGGCCAACGCCGCCCTGCTTGACTACACCCTGTGCCACTACCCGCACTGCGGGGACAAATTCCAGCAGCTGCTGCTGTGCCTGGTGGAGGTGCGGGCCCTGAGCATGCAGGCCAAGGAGTACCTGTACCACAAGCACCTGGGCAACGAGATGCCCCGCAACAACCTGCTCATCGAAATGCTGCAAGCCAAGCAGACTTGAGCCTGGGCCGGGGGCGGGGCCGGGACTGGGGGCGGGACTGGGGGCGGGGCCTGGGCGGGGCCGCAGCCACACCGCTGGCTCCGCATGGTTCATTTTCTGATGCCCACCGAGGAGCCCCAGCCCCGTCCCAGAGGCCGCTGCCCCTGAGTTCTGACACTGTGTGTTTGGGAAGGTGGGTGAGGCTGGGCAGGGCCTGGCGGAGGTGGAGTGGCCACTGGCACTTGCCTGCTGCTTGGAGTGCCCCAAGGAGGTGGCTGTTAACCACCCGCCCCGCCCCCTCCCTGCTCCCAGCTCTCTCTCCTGGAGTCTGAAGCCTGCAGGTCCGGGGAGGAGGTTCGGGATTCCCTGGTGGGCCTCGACGTCCCTTGGATCAGAGGTCATCCCTTCCTCCTCTCCTGGAAACAGACAGGGAGAAGTTGAGCAGGTATCAACTAGGGGAGGAGAGAGGGTCTCCAGTGTTCCCCCCATAGAGACCAGGAGGGAGAGCCTCTGTTTTGTAAACTAAGGATAACCGAGTTTGCTAAATTGAGAGGGGCTATTGGGCCCTAGAGGACACTAGGAGACTGGTTAGGACAAAAAGACCTTCTCCCTAGCCCTTCTACCCCACCTGACCTCTGCAAGAGGGGGCATTGATACATCATCGGGAAAAAACTTTGCTCCAGGCATCACTGATTCCCTCTCCCACCCAAGGAGAACGTTTGGTACAATCGACATCCTAGCCCCACCCAGAGGTGGCCCTCCCAGGCTGGTATTTATCTGCAAGGTTGTAGTCAAGAGGTTTTTCTCCCCGCTTTTTGTTTTTAAGCTTCTAGACACTCCTTGAAATGTGTGTGTGATGGAGGGAAGGGGACAGATTTGAGGACTGAAGCTGGGGCTTGGGGATTGCCACTAAGTACAGCTGACGGTTTCTCCCCGGACACTCGCCTACTAAGTACCCTTGGGGTGGTGCTGGGTCATTACTTCTGAGCCCCAGCCCCAATCCAGAGAAGCGCTGTTGCCCGCCCTCCACCCACTAGGTGAACAGCAGGATGCCCTGTTGGGGGCTTCAGGTCTCTGTGGGTGGGAATGCAAGTGAACTTGGGAGGGGGCACGGGCCTGTAGATCAGGGATAGCGCTGTTGATCCCCTCTCTGTGGCTCCAACCCGTTGGGTCCCTTGCTGCAAACCCATGAAGCTGGCCCTCAGCTCCCTGACCCCCTGTCCTAGGTCATGAAGGACACTCTGCAGGGTGAAGCACCAGGGAGAGGCCTCGGCTGTCTCCTGTCCCCGGCGGGGTGCCTGCTGTCCGTCCCGCTTTCATGTTACTGTTGCAGCTTGTGCTGAGCCTGCCCAGTTGGAGGAGACTGGGCACCCCTGCCTCCTGCCTCCCGCCTCCCGCCACCCTGTCTCAGTACCTCCCCTCCCCGCCCCCTGAAACATGTGCCCCTGCCAAGGCCGGAGACCCACAGCCCTGAAACGAGAAGTGCCCTTAAGGATCACCCCAGCCCCCACAGCCCTGGAATAAATTTCGCAATTAGTTTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136931-NR5A1:NM_004959:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=FE(23.6=100)
A:
NA
C2:
PF0010425=Hormone_recep=PD(36.5=91.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)