BtaINT0104257 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007235 | NTNG2
Description
Bos taurus netrin G2 (NTNG2), mRNA. [Source:RefSeq mRNA;Acc:NM_001099025]
Coordinates
chr11:102342351-102345596:+
Coord C1 exon
chr11:102342351-102342523
Coord A exon
chr11:102342524-102345569
Coord C2 exon
chr11:102345570-102345596
Length
3046 bp
Sequences
Splice sites
5' ss Seq
CATGTGCGT
5' ss Score
5.1
3' ss Seq
TGACCCCCCTCTTTCCGCAGGTG
3' ss Score
13.67
Exon sequences
Seq C1 exon
GTGCAAGTGCAACCTGCACGCCAACCTGTGCTCCGTGCGTGAGGGCAGCCTGCAGTGCGAGTGTGAGCACAACACCACGGGCCCTGACTGCGGCAAGTGCAAGAGGAGCTTCCGCACGCGGTCCTGGCGCGCCGGCTCCTACCTGCCGCTGCCCCATGGCTCTCCCAACGCAT
Seq A exon
GTGCGTACACAGACTGGCCGTTGCACTCGGGCACCCCCACCCCTCCCCACCTCAGACCAGCAAGGCCATGGGCTCCCCCAACCTGCAGCCTCAGGAGCTGCGGATCTCATCCCAAACACGCATGCACACACACTTGCACAAAGGTGTGCACGCAAACATGCATGCATAGACACGTGTGTGAACATATGCCCACACTCGCACAAAGATGTGCACACATGAACATGCACACATGCATGCAGACTCACATGCACACACACACAGGTGTGCACATAGATCTGCGTGCATGCACACACACGGGTGTGCACACACAAACATGCACACATGCGCACACACATATGAACACACACAAACATGCACACGTGCGTGCACACATACATTTGTGAGCTCTTGCACAGATACACAAAGGTGTGCACACAAACCACTGACACACATTTGTGAACACATGCAAAAAGGTATGCATACAAACATGCATGCATGCCCTGACATATGTGCACACACATGTGAACACAGGGGCACGCCCTTTTTAACCAAACTCCCAAGTGCCAGGCCTTGTCATCAAGACCCTCTAGCATGCCTGCATCCTGCTGGCAACCTAAGATGAGCTGACTCAGCATCCTTCTCACTGACCTTACCCTTCGTGACCCCCAGGCAGGAGAGAAGGCCCACAGGGTGTCAGGGAGGAGTGGGTGGGGACCCCTCCCTCCAGGCTGACCATTCCTCGTAAATGTCTCAGTGTTTACAGGACATTTACAGGCACTGCATGGCACCAAATGCTACGGGGTCCCCCCTTGAACCTCCGGGTGGCCCCTGGAAGTGGGTCTCCTGGTCCCATTTTACAGAGGGATCCTCCGAGGCCCTGGCCATGCCCTCTACACAGTCCCCTCCTCTCTTGGCTCAGTCTTCGAGTGCCAGAGTCCATCCTCAGGGTGTGCCCTCACACACCTGCACCATGAACACACTTCAGGGGTCCCCGTCATCAGCCCCCAGCACAGTCCCTGGGTGTCTCCTTGAAATTGAGTCCCAGGGAGCCCCCAGCTGCTGTGGATAAGGGTCCAAGCTCGTCCATGGTGGGCTCTCCTCAGCCAGTCCCCCAACCCTACCAAGTGACTTGCTGACACTCGGCCAGTGCTTTGTCGAGGAGGCTGCACAGGCACTTTATATACAGCTCTTCCCACCTCTGATAACCTCTCAGATGGTGTTTTCATTATGGTCCCACTCTCCAGATGAGCAAACTGAGGCCCAGCGACCCTCAGGGCCCTCTTAGTTTGGCAGCAAGTTAAGCACCAGCACTGGAGCCAGTTCCCAAGCCAGGCTGGGCTGCTGGGACCACTCGGCCCGCGCCCCTCCTGGGCACACTCTTTGGAGCCCGTCCATCGGCTCCCTGCAACCGAGTGGTGAAAGCTTTATGTAACTTGAGGCTGATCAAAGCTGGAAGCCTCGCGATGAGGCTGTGACAGTATGTCGTGTGTGCGCCAGGGACACTCTCGAGGCCTTTGAAGGGTGACTTACTGGAGTTGCAGCCCCCCCGCGGGCCTTCAAAGGCACAGACAGTGCTCTGGGCTACAGCCCTGCCCCACCCGGAGGACGTCAACCCATCTCTGTTGCCAGAACCAGTTCTTGAGTTGCTGTCACCTCCCTCTGACTCAAAGGCTCACCTCCCTTCAACTGTTCTGCTGCCTCCCACTGAACCCCTCTCTGGGCCCCATTCTCCTCCTAGAAGGATCCGTGAGATCCCCCGGCACCCACAGGCCGATACCATTACCTGCAGGTCATCCTGTGGGGCCCCCGGCGCATCCCCCCAGGCACCCCTCACTGTCCCGCCCCCAGAGTCACCAAGAGAGGCCCACACCCCAGCAACCACCCTGGGGCTCCTCACGCCCCATCTTTTGTCAGGACTGCCTGGAGGGGACGCTGTGGCCCCGGCTCCTTCCTCCTGAGACTGACGACTCCCACCCAGGTCAGACCGTGGCCTCGGGCGCCCGCAGCCCCAGAGCACAGACGCACACAGACAGAAAGGGCCAGGTCAGGGTCAGAGTCAGGCCTCTGCCACTCAGAACTGTGAGGCCTTGGACAAGCCGTCTCTCCCTCTGAGCCTTTGCTCGTTTGTAGAACTAGGACCCTAGAAGCCTGCCCTAGGGCTGTTGTGAACTGTAGCCCGCCAGGCTCCTCTGTCCATGGAATTCTCCAGGCAAATGAATCCTGGAGGGGGTAGCCATTTCCTTCTCCAGGGGATCTTCCCGGCCCAGGAATTGAACTTAGGTCTCCTCCATTGCAGGATGGATTCTTTACAGGGAAACCCAAATTGTAAAGTGAAAGTATTAGTCGCTCAGTTGTGTCCGACTTTTTGCTACCCCACTAGGCTCCTCTGTCCATGGGATTTTCCCAGGCAAGAATCCTGGAGTGGGTTGCCATTCCCTTCTCCAGGGGATCTTCCAGCGATCGAATCTCCTGGATTGCAGGCAGATTCTTTACCATCTGAGCCACCAGGAAGCCCTGAGCACTGAATGGCCAGGGTGGGGCGGCACTCAGCATGGGCCCACATGCAGAAAGCCCTCAGCACGTGACAGCCGCTGTGATCGCCTTCCCGTCTACCCCACAGGCATCCCTGTGTTTCCCAGATGGGCACAGGCACAGCGGCTTCCCCCTGTGGCAGCTTCCATCAGAGCCTCCAGTAAACCAGTCTGTCCCTGTGCCTAGGACCCTCATGTTCTCCGACACCCCATTACCCGCCAGAGGATGACCTCCGGCCTCCTTGCCTTGCACTGGAGGACCTGAGAGTCTAAAGTCAAATGAGAAGGGTGCATGTGAGGCCCCCAGCAGAGGCTTATCAGCAGGTCCCCTGATGGGGTAAGTCACAGCTCCAAGACTCAGTTTCCCCATCTGCACAATGGGCTCAGAGCAGCCCTTCCCTCTCAGGCACCAGTGAGGGTGTAAGTGGAGAATCCGACCCAGTCCCTGCATGGTGAGGTGCCCCAGCCCCCCTGGTTTCCTGTCCCCAGCCCTGCCACCCCCTCCTTACTCTTCTGTGACCCCCCTCTTTCCGCAG
Seq C2 exon
GTGCCGCCGCAGGCTCCGCCGTCGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007235:ENSBTAT00000064483:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=98.3)
A:
NA
C2:
PF0005319=Laminin_EGF=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development