HsaINT0116419 @ hg19
Intron Retention
Gene
ENSG00000196358 | NTNG2
Description
netrin G2 [Source:HGNC Symbol;Acc:14288]
Coordinates
chr9:135102236-135105982:+
Coord C1 exon
chr9:135102236-135102408
Coord A exon
chr9:135102409-135105958
Coord C2 exon
chr9:135105959-135105982
Length
3550 bp
Sequences
Splice sites
5' ss Seq
CCTGTACGT
5' ss Score
5.32
3' ss Seq
CGCCCGTCTCTCTCCCACAGGTG
3' ss Score
14.46
Exon sequences
Seq C1 exon
GTGCAAGTGCAACCTGCACGCCAACCTGTGCTCCATGCGCGAGGGCAGCCTGCAGTGCGAGTGCGAGCACAACACCACCGGCCCCGACTGCGGCAAGTGCAAGAAGAATTTCCGCACCCGGTCCTGGCGGGCCGGCTCCTACCTGCCGCTGCCCCATGGCTCTCCCAACGCCT
Seq A exon
GTACGTGCCATGCCCCGGGGCCACGAGCCCACATGGCTATAATCTTCCCTGCCCGTCAATCCCAGGAGCTGTGGATCATACACACGCACACAAACCTGCACACAGGCACATACGTGTGCACATGCATGCAAACGTGCACACAGAAACATACGAGCATGCATGCACAGGCATGGGCACACATATGAATGCAAAAACACGTGCATGCACAGAAACACACGTGCGTGCATGCACCCCCACACACACACCTTGTTCTACAGCTCCCAAACGCCAGGTCTCATAACAAGTCCCTCTAGCATACCTGCATCCTGCTGAATGCTAAGCTGCCCTTCCAGCCCTGGTCCACAGGGAAACCCGAGAGGAGCTGCTCAGCAGCATTCCTGCAACCCTTCGCCTTCTTGACCCTGAAGGCTGGCAGGTGGCCCCCATGGGATGGCAGGGAGTGATGGGGTGGGACCCCCACTTCAGGTGAGGGGATCAGTAGCATCATCCCTGATCATAAGCATCTCTGGGGTGTTTGGAGCGAGCCACCAAGGCCAAGTGCTGCGTGTTCAGCACTCACCTCCATCCTCAGAGCAACCCCTGGGAACTGAGCTTCCGTTATCCCTTTTTACAGATGTGTCCTCTACGGCCTGCACCAGAGTCCCCCCGCACGTGCTCTCTGCCCACCCCTCTCCTGTCCTCGCCCAGCCATGCCAGGGAGCCATCCTCAGGGCCTGCCCACTCACATCTGCATCATAGACCCCCTTCTGAGGACCACCCACCCGGGCGCGCTAGCGTAGTCCACACTGTCTCCATGAAATCAGAATGCCAGGAAGCCCCTGGGCTGCAAGTGGAGAAGGCCACAGACTGCCCCTGGGGTGGGCTCTCCCTGACCCCCACCACTGCCACTTTACGGCCGTTCTCAAGTGTGTGGTTGGTGTCCGAGGCCCTCCTAGGCACTTTGTGCATCTCGCTTCACCCTCACACAGCCCCGCAGGGTGGAGTCCTTATTACGGTCCCTTCTCCAGATGAGCAGACTGAGGCCCAGCGAACCTCGGGGCCCTCCCAGGTTTCACAGTGAGTTGCATGCCAACGCCAGGGCTTAGGGCAGCTACTGGATCTGATGCTCAGACCAGGCCTGGGCAGTGGCCTCCTGCACCCCATCTGGGCATCCTCCCTCGACGGGTGAAAGATTTATGTGACTTTAGGCTGATCAAAGCTGAGAGCCACGTGCAGAGGCCATGACAGGCATGTCACGCGTGTGCTACAGCAGGCGGTGAGACAGGCCTTTGAAGGGGTGACTTGGCAGGCACCCGACAGCACTCTCGGGTCTTCAAAGGCACAAAGAGCACTCCGGGGGCTGACAGCCCACTCCAGCCGCTGCCTCCTCCCAGCTTCCTGTCCCCATCTCTTTGTGGTCCAAACCCTTTCCTGAGGTCTCTCTTTAGTGGCCGTCACTCTCTCCCTGACTCACAAATTTGCTGCCCTTTCGTCTGTCCTGAGGGCCGCTCTCTCTTCCCTCCTCTCTGTCTCAGTTCTCTCCACCATCACACCCTCCTTTTTTTTTTTTCTTAAAGATAAGTCTCTCACTCTGTCGTCCAGGCTGGAGTGCAGTGGCGCAGTCATGGCTCACTGTAACCTCAACCTCCTGGGCTTGAGCGATCCTCCCACTTCAGCCTCCCAAGTAGCTGGGACTGCAGGTGCACACCACCAGGCCCAGCTAATTTTCGTGTTTTTTTCAGAGAAAAGGTTTTGCCATGTTGCCCAGGCTGGTCTCGAGCTCCTGAGCTCTAGTAACCCTCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCACGTCTGGCCATGTCTGGCTTTTTTCTTCCACTTGCCCCCTGCGCCTGGAGGGTTCTGCCCATCTCTGGCCACCTGAGACTCTTACCTGCCAGTCACACCTAGGAGGATCCACTGTCCCCACCCTCACCCCCAGTCACCACCTCCAGTCTAGCCAGCGATGGATAGACAGGCCTGTAGGGGCTGGGCAGCTGGGTCTTCCTTACTTAGGGGAGACTCCTGAGCTGGCCCCACCTCCTGCTTCCCTGGGAGTCCCCGGGAATTGCCTTTGAGGCCCCCAAGCCCCAGGAAGGAGGGGTTTCTTCTGGCATTTGCAGGGTCACAGGTGAGGCTGGAGGCGCTGCTGTCCTCAGCACCCAAGTCTCCTGCCTTCTCTGGGGTGCCAGCAGGAAACAGCCCAAAGAGACACAGAGGCTAATTTTGCCCTCACCCTGCCCCTACCGTGACCCCTCCTCAGTAAGTGGCACCGACACCCACGGGGCCAAGTGCAAGTCTGGGGGTCACCTTGACTGGAGACCCTCCTCCCGCCACGTTCTTTGAACTTCCCTCCATCCGCTCCAAGTCTCTCCCAATGCCATCCTCAGCCCTGCAGCAGCCCTCACTCCCGATGCCTTCCCACCTCCTCACCACTCTGCCCCCACCTGGCCAGCCCATCACCCTCCAGGGCCCAACTTGGAGCCCCCAGGACCTCCCCGTGCCCTGCCTGATGTCCCGCCTGTCCCCACAGAGCCTCACTTGGTCACCACCCAGTCCTGGCCCTTGCTTACTGTGGCTGCACCCCGAGGTGTCCTCAGGGTCTAGCAGGTGGCTGCCCAGACATGGAGGTGGAGGAAGGAGTGGGTGGGGATGGGCTTGTCCTCCCAGGCCTCCCTGCCTGTCCTGCTGGCCACAGCCTTGGCTTGCCCAGGAGAAGCCCATGGGCCACACATCCCACTGCCAATCCCACAGCGTCCTTTCTCGGGAACACCGTGGGGAAAGCTGTGGCACCAGCTCCTTCCTTTTGCAACTCTGATGAATCTCACCCAGGGATTTCAAGGCCCCTGGTCACACCAGGATCATAGGCCTCCCCCATCCCCTGGACACACAGAGACACACCTGGATTCAGGTCAGGCCTCGCCCACTCTCGGCTATATTTCTCCCCAAGCCGTGTGTCCTCAGCTGTAGAATCAGGACCATAAGGAAGTTCCCTCATAGGGTTCTTGTGAGGACGGCACGATTTACGCAGGGGATGCTGACACCGTGCCTGGCACGTGGGACGCACTCCACCCGCGGCAGCCGCTCCCATGGCTTCTCAGTGAGTTTTCCAGCCACACTGCACTTCTTAGACAGGAACACTCCATACGATGTCCCTGTCCTGCACTGGAGGGCCCAAAAATCTGAAATAAGAGGAGGAGTGCGTGTGAAGCTCCCAGTGGAGCGTTTGGCACCTGTCCAGCATGTCCCCAAGGGCAAGTCACGGCTCTGAGATTCAGTGTCTCCTTCTGCAAAATGGGCCAATAGTGGTTCCTCCCTCCCAGGGCTGAAGTGAGGATGAAATGGGATAATCCACCCCCGTCCCCACACCCTGCAGGTCATCATGATTGCTAGCAGTTGTGTGGTGGAGCAGGTGCTCTTGAGGGAGCGACACCTCCAGGTGCTCCCCTGCCCTGCTGGCCCCTCTGCAGGGAGGTGACACCCAGGCCCCTTCCCCTGGGGCAGCCAGCTCACGCCCGTCTCTCTCCCACAG
Seq C2 exon
GTGCCACTGCAGGTTCCTTTGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196358-NTNG2:NM_032536:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=96.7)
A:
NA
C2:
PF0005319=Laminin_EGF=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)