HsaINT0116419 @ hg38
Intron Retention
Gene
ENSG00000196358 | NTNG2
Description
netrin G2 [Source:HGNC Symbol;Acc:HGNC:14288]
Coordinates
chr9:132226849-132230595:+
Coord C1 exon
chr9:132226849-132227021
Coord A exon
chr9:132227022-132230571
Coord C2 exon
chr9:132230572-132230595
Length
3550 bp
Sequences
Splice sites
5' ss Seq
CCTGTACGT
5' ss Score
5.32
3' ss Seq
CGCCCGTCTCTCTCCCACAGGTG
3' ss Score
14.46
Exon sequences
Seq C1 exon
GTGCAAGTGCAACCTGCACGCCAACCTGTGCTCCATGCGCGAGGGCAGCCTGCAGTGCGAGTGCGAGCACAACACCACCGGCCCCGACTGCGGCAAGTGCAAGAAGAATTTCCGCACCCGGTCCTGGCGGGCCGGCTCCTACCTGCCGCTGCCCCATGGCTCTCCCAACGCCT
Seq A exon
GTACGTGCCATGCCCCGGGGCCACGAGCCCACATGGCTATAATCTTCCCTGCCCGTCAATCCCAGGAGCTGTGGATCATACACACGCACACAAACCTGCACACAGGCACATACGTGTGCACATGCATGCAAACGTGCACACAGAAACATACGAGCATGCATGCACAGGCATGGGCACACATATGAATGCAAAAACACGTGCATGCACAGAAACACACGTGCGTGCATGCACCCCCACACACACACCTTGTTCTACAGCTCCCAAACGCCAGGTCTCATAACAAGTCCCTCTAGCATACCTGCATCCTGCTGAATGCTAAGCTGCCCTTCCAGCCCTGGTCCACAGGGAAACCCGAGAGGAGCTGCTCAGCAGCATTCCTGCAACCCTTCGCCTTCTTGACCCTGAAGGCTGGCAGGTGGCCCCCATGGGATGGCAGGGAGTGATGGGGTGGGACCCCCACTTCAGGTGAGGGGATCAGTAGCATCATCCCTGATCATAAGCATCTCTGGGGTGTTTGGAGCGAGCCACCAAGGCCAAGTGCTGCGTGTTCAGCACTCACCTCCATCCTCAGAGCAACCCCTGGGAACTGAGCTTCCGTTATCCCTTTTTACAGATGTGTCCTCTACGGCCTGCACCAGAGTCCCCCCGCACGTGCTCTCTGCCCACCCCTCTCCTGTCCTCGCCCAGCCATGCCAGGGAGCCATCCTCAGGGCCTGCCCACTCACATCTGCATCATAGACCCCCTTCTGAGGACCACCCACCCGGGCGCGCTAGCGTAGTCCACACTGTCTCCATGAAATCAGAATGCCAGGAAGCCCCTGGGCTGCAAGTGGAGAAGGCCACAGACTGCCCCTGGGGTGGGCTCTCCCTGACCCCCACCACTGCCACTTTACGGCCGTTCTCAAGTGTGTGGTTGGTGTCCGAGGCCCTCCTAGGCACTTTGTGCATCTCGCTTCACCCTCACACAGCCCCGCAGGGTGGAGTCCTTATTACGGTCCCTTCTCCAGATGAGCAGACTGAGGCCCAGCGAACCTCGGGGCCCTCCCAGGTTTCACAGTGAGTTGCATGCCAACGCCAGGGCTTAGGGCAGCTACTGGATCTGATGCTCAGACCAGGCCTGGGCAGTGGCCTCCTGCACCCCATCTGGGCATCCTCCCTCGACGGGTGAAAGATTTATGTGACTTTAGGCTGATCAAAGCTGAGAGCCACGTGCAGAGGCCATGACAGGCATGTCACGCGTGTGCTACAGCAGGCGGTGAGACAGGCCTTTGAAGGGGTGACTTGGCAGGCACCCGACAGCACTCTCGGGTCTTCAAAGGCACAAAGAGCACTCCGGGGGCTGACAGCCCACTCCAGCCGCTGCCTCCTCCCAGCTTCCTGTCCCCATCTCTTTGTGGTCCAAACCCTTTCCTGAGGTCTCTCTTTAGTGGCCGTCACTCTCTCCCTGACTCACAAATTTGCTGCCCTTTCGTCTGTCCTGAGGGCCGCTCTCTCTTCCCTCCTCTCTGTCTCAGTTCTCTCCACCATCACACCCTCCTTTTTTTTTTTTCTTAAAGATAAGTCTCTCACTCTGTCGTCCAGGCTGGAGTGCAGTGGCGCAGTCATGGCTCACTGTAACCTCAACCTCCTGGGCTTGAGCGATCCTCCCACTTCAGCCTCCCAAGTAGCTGGGACTGCAGGTGCACACCACCAGGCCCAGCTAATTTTCGTGTTTTTTTCAGAGAAAAGGTTTTGCCATGTTGCCCAGGCTGGTCTCGAGCTCCTGAGCTCTAGTAACCCTCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCACGTCTGGCCATGTCTGGCTTTTTTCTTCCACTTGCCCCCTGCGCCTGGAGGGTTCTGCCCATCTCTGGCCACCTGAGACTCTTACCTGCCAGTCACACCTAGGAGGATCCACTGTCCCCACCCTCACCCCCAGTCACCACCTCCAGTCTAGCCAGCGATGGATAGACAGGCCTGTAGGGGCTGGGCAGCTGGGTCTTCCTTACTTAGGGGAGACTCCTGAGCTGGCCCCACCTCCTGCTTCCCTGGGAGTCCCCGGGAATTGCCTTTGAGGCCCCCAAGCCCCAGGAAGGAGGGGTTTCTTCTGGCATTTGCAGGGTCACAGGTGAGGCTGGAGGCGCTGCTGTCCTCAGCACCCAAGTCTCCTGCCTTCTCTGGGGTGCCAGCAGGAAACAGCCCAAAGAGACACAGAGGCTAATTTTGCCCTCACCCTGCCCCTACCGTGACCCCTCCTCAGTAAGTGGCACCGACACCCACGGGGCCAAGTGCAAGTCTGGGGGTCACCTTGACTGGAGACCCTCCTCCCGCCACGTTCTTTGAACTTCCCTCCATCCGCTCCAAGTCTCTCCCAATGCCATCCTCAGCCCTGCAGCAGCCCTCACTCCCGATGCCTTCCCACCTCCTCACCACTCTGCCCCCACCTGGCCAGCCCATCACCCTCCAGGGCCCAACTTGGAGCCCCCAGGACCTCCCCGTGCCCTGCCTGATGTCCCGCCTGTCCCCACAGAGCCTCACTTGGTCACCACCCAGTCCTGGCCCTTGCTTACTGTGGCTGCACCCCGAGGTGTCCTCAGGGTCTAGCAGGTGGCTGCCCAGACATGGAGGTGGAGGAAGGAGTGGGTGGGGATGGGCTTGTCCTCCCAGGCCTCCCTGCCTGTCCTGCTGGCCACAGCCTTGGCTTGCCCAGGAGAAGCCCATGGGCCACACATCCCACTGCCAATCCCACAGCGTCCTTTCTCGGGAACACCGTGGGGAAAGCTGTGGCACCAGCTCCTTCCTTTTGCAACTCTGATGAATCTCACCCAGGGATTTCAAGGCCCCTGGTCACACCAGGATCATAGGCCTCCCCCATCCCCTGGACACACAGAGACACACCTGGATTCAGGTCAGGCCTCGCCCACTCTCGGCTATATTTCTCCCCAAGCCGTGTGTCCTCAGCTGTAGAATCAGGACCATAAGGAAGTTCCCTCATAGGGTTCTTGTGAGGACGGCACGATTTACGCAGGGGATGCTGACACCGTGCCTGGCACGTGGGACGCACTCCACCCGCGGCAGCCGCTCCCATGGCTTCTCAGTGAGTTTTCCAGCCACACTGCACTTCTTAGACAGGAACACTCCATACGATGTCCCTGTCCTGCACTGGAGGGCCCAAAAATCTGAAATAAGAGGAGGAGTGCGTGTGAAGCTCCCAGTGGAGCGTTTGGCACCTGTCCAGCATGTCCCCAAGGGCAAGTCACGGCTCTGAGATTCAGTGTCTCCTTCTGCAAAATGGGCCAATAGTGGTTCCTCCCTCCCAGGGCTGAAGTGAGGATGAAATGGGATAATCCACCCCCGTCCCCACACCCTGCAGGTCATCATGATTGCTAGCAGTTGTGTGGTGGAGCAGGTGCTCTTGAGGGAGCGACACCTCCAGGTGCTCCCCTGCCCTGCTGGCCCCTCTGCAGGGAGGTGACACCCAGGCCCCTTCCCCTGGGGCAGCCAGCTCACGCCCGTCTCTCTCCCACAG
Seq C2 exon
GTGCCACTGCAGGTTCCTTTGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196358:ENST00000393229:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.381
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=98.3)
A:
NA
C2:
PF0005319=Laminin_EGF=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development