GgaINT1020057 @ galGal4
Intron Retention
Gene
ENSGALG00000003677 | NTNG2
Description
netrin G2 [Source:HGNC Symbol;Acc:HGNC:14288]
Coordinates
chr17:6470057-6471846:+
Coord C1 exon
chr17:6470057-6470229
Coord A exon
chr17:6470230-6471819
Coord C2 exon
chr17:6471820-6471846
Length
1590 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
CTTCTCCTTGTCTTTTCCAGGTG
3' ss Score
13.96
Exon sequences
Seq C1 exon
GTGCAAATGCAACCTCCACGCTAACCTGTGCACCTTCAAGGAGGGCAGCCTCCAGTGCGAGTGTGAGCACAACACCACGGGGCAGGACTGCGGCAAGTGCAAGAAGAACTTTCGCTCCAGGTCGTGGCGAGCAGGATCCTACCTGCCCCTCCCCAACGGGTCCCCCAATGCAT
Seq A exon
GTAAGTAACCTGCACAATGCCCATGGTGGGGAGCAAGCTCTCATCTTCTCCTCCTCCATCTCAAAGCAGCACGGGGCGCTCAGCTCTCAGAAGGGAAGTGAGTATTTACCTGTGGTGTGGTGCACTGAGGAACGAGAACTGATCCGGGTGGGCGCAAAGGGGCTCTGTTGGTGGGTGGGAGATCAGTGATGAGTCCAAGGATGACTTCAGATCTGTACAAGTATGGGCCAAAGTAAAGGTTTGTGGCTTCGTAGCAATGTAAATTAATGTCCCTTGGAGGAAATTATTTGGCCACAGTAGAGCCTTGGCTTTCCCATAGCCCACGAGCCTAGTGAAGCTGGCTGCAGGAGCTGCACCACAGCGATCCTGGCTGATTTCTGGATCCTGTTCTGTGCGTGTCGGCGTCGCAGGCAGCACTGAGTGCTGCAGTCCCTCTGCTCAGCTCCCGTCTCATCCAATTGCTGCAGCAAGACAGTGACAGAAGTGAAGGTGCGCAGATGAGAGAAAGGATGTCTACCCACCATCCTTCGGGCCAGGGAATTGGGGCAGGAAGCATCACAGATGGGCCACTTTCTTCTGGGTTTCCATCCAGTCCACATCAACAGACTTGTTTAAATGTCATGGAGCCACAGTAGCCCCTTCGGCCTTTCAAGCAGAAGCTTTGAGCATTACCAAAGAGAATCTTTTCCCTCCCTCCCCCCAATTTTTTGAAAGATTTATGTGCTTTAAGATGATCAAAGCTGAAATCCAGGCTCCGAAGGCCGTGACGGGAATGTTTTGTGTGTGCCAGGGATGGTAGACGAGCAGGTTCTTTGAAAGGGAACGAGCTTGTCAGCTACCACCAAGCGGCTGCATCGCTTCAAAGGAGACTGGGAAAGTTTCTGGTGTTGACAGGCACAGACATGCTGTTCTCTCCTTTTCCCTCCCCTCTGTTCCTTGTGTCTCTCCCTATCTCTTTTTCTCCTCTGCTCTCGTTTCTCCCATTCATCTCTCTTCCCATCTGTCAATCAGTCTTCCTTCTTTCCCCCCACCTCTCTGTTGCTTCCCTCTCCTCCATCAACATCCTCTTCCTCTGCAAGAGGGACTGCTCTCCATAGCCCTCTCCTCTTGGAAGTCTTCCACCAGTGGCTCCCTGCTCTGTGTTCGTGCCAAGCTGAGGCTTTCCACGCCTTCAGGTGGCAGATTTGAATCCCGTGGCTTTGCAGCCCCCTATGGGAAAGGCACTGACACCTTCTCTCCCTCTGAGGTCTGCATGGATGCTACAAACTGGTCCAGACCCTGCAGTCCTCACTTAGCGCAGGGAACATCACCAGGTGTGCTTGTCCTTCACCGGGCATCAAAGGTAGGTCAAGATGTACAGAAAACCTTTCAGCCAGGACCAAGATAGTTCTTCTACGCCATGAGAAAGGCGTGTGATATCAGACCCCGGGCATCTCCTCTGTGCTTTGACAAAAGCAGCTGTTAAGACGATGCATCTGGCATGTTTGACTATGAGCAAGGCCTCTGCTAACTAATTGCTGTTTGCTCCCACTCTGTGCACCTGTTTGATCTCCTGCTTCCAGTGACCACGCTTCTCCTTGTCTTTTCCAG
Seq C2 exon
GTGCAGCTGCAGGCTCAGCCTTTGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003677:ENSGALT00000005827:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(87.7=96.6)
A:
NA
C2:
PF0005319=Laminin_EGF=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]