RnoINT0103726 @ rn6
Intron Retention
Gene
ENSRNOG00000013694 | Ntng2
Description
netrin G2 [Source:RGD Symbol;Acc:1307089]
Coordinates
chr3:7752836-7755292:-
Coord C1 exon
chr3:7755120-7755292
Coord A exon
chr3:7752863-7755119
Coord C2 exon
chr3:7752836-7752862
Length
2257 bp
Sequences
Splice sites
5' ss Seq
CCTGTACGT
5' ss Score
5.32
3' ss Seq
ACCCTCTTGTGCCCCTGTAGGTG
3' ss Score
11.39
Exon sequences
Seq C1 exon
GTGCAAGTGCAACCTGCATGCCAACCTGTGCACTGTGCGTGAGGGCAGCCTGCAGTGTGAGTGTGAACACAACACCACAGGTCCTGACTGTGGCAAGTGCAAGAAGAACTTCCGCACGCGCGCCTGGCGAGCTGGCTCCTACCTGCCCTTGCCCCACGGCTCTCCCAATGCCT
Seq A exon
GTACGTACGTAACCTGCCCAGCTGCAGTCCTTGTTCAGTGACCCAGCGCGGTGGCTCACATGTGCATTGTGTGCACACCACACACGCACACACGCACACACAGAGGAGGGGAGGAAGCATCCCTCCTCCATGTCTTCTGGGCTTTATTTTCAGTCCTAGTTAGAGGCAGGTCAACCTTTCTCAGTATCTCGTCTGCCACCCTTCTTCGTTCTGAGATCAGGGCACGAACCCCATGGAGATGCAGAACAGGGGGTACAGTGAATGGACCCTAATGATGAGTCTTATGGGATGTATGCCACATGGCACATCTGGTACTGTGTCCCCAGCCCAGCTGCCAGCACTCAGTGTAACTGTCACATTTTGTAGATGTGTCCTTTGAGACTCTTGGTCTGAGCCCCTGCTCCCAGCCCAGTCTCGTTCTCCCTTGCTCAGCCATCGAAGGACGCCATGTTTTGTCCACACATGTCTGCATCATGAGCACCCTTTGAGAACCCCCACCTCCTCGGAACCAGAACATGCTGCACTAAATCACAGCTCCCACAAGTCTCTAGGCTGTGAGCAGAGGAGAGCCTAGGCTAGCATGTGAAACACACCAAATGACCTGTTCCAGGCTGAGGCTGCACCAGATGCCACATGTCGTTTCCCTGAGACCTCACAATACCACAGGAGTGTCATGACTAACCCGCCCTCCAGATGAGCATCCGGAAGCCCAGACAACCCAGTGCCCTCCTGGTTCTATGGCTGGTCCCAGACAGCATAGGACCCTGTGACAAAGCCAGGGCTCACGTAGCTCCTAAGCCAACTGTCCCATCTGGCACCCTCCCTCACCCCTAAAAGATTCATGTGGCTTTAGACTGATCAAAGCTAAAAGCTGCAGCAAGGCAGACGGTGACAGGCCTAGTGCGCGTGGGCTACAGCCGGCAGTGTGACAAGCCTTTGAAGAGGTGACTTGCCAGGCACCTCGAGGCACTCAAGGGTCTTCAAAGGCACAGAAGGGGCTTGGCGGACTGCTGGCCTGCCCCCTGTCTAGCTCCCTTATCCTGGGTTACTCTCCACATCTCTTTGTACCCTGAACCTTCCTTTAGTCCTTGTGGTTGTCTCTCGCTGGTGAGCTTGTCTCCCCTCCTTCCGTCCTAAGGCCAGAACCAACCCCCAGCACTTCTGCCTGGTTCCTGCCTCAGCCCCTGACTGACTGTCACCTCCACCATCACGGACCGAGACTCCGACCTGCAGAACACCTAGGGCACTGTCCCCATGCCCTGCCTAAGCAGCGGACAAACAGACCCGAGTTGCTTTTGTGTGTCTTGTCTCCTTTCTGCTGAGAGAGCCTGCCCCCACCTCACCCCCATTTCCCTCTACCTACCTCCACTCAGGGATCTCTGCTTCATAATCACTGGGGCACCCCCTCCTAGGTGCCCACTACCCCAGAGCCTTGGGGATGAAACCCTAAGTTGTCAGTCCCCCAAGTACAAGGCCCCTGTGAGATCACCATACCTTCTGCCTCCGTGTCTCCCCATCCCTCTAAGCCCCGTCTCTTGGAACTGGACCTCTCCCTCAGGGGCAGACTCTGAGAGAGTCTTGCCTCTATGCCCCACTCCCAGCATCTATGAGCCCTTGCTCTCAGCTCCCACACTCCCAAAGTCTTGTACATATCACACGCATACGGTACCTGCCGAGCTGTGTAAAACCAGAGTAGATGTCAGGAAAGTCATGTCACCCAACCAGCCCACTGTCCCCTCCTAGGGTAAAGACTTTCTCAGAGCCCCCTAGAGTGAAGTCATGACTGACTCCTTCCTTCCGTGACTGTGACAGTTCTACTCTGAGATGGTGACATCCTTTGTCAAACCATAACCCGGGCTTCCTCTCCAACAGAGGCACAGAATACCTAGAGAGACTTGGATTCAGCCTCTCCCACCACCATGTCTCCCAGCAGGCCACACCTCCAATTCCCCGCTGATAACTGTCCATGAGGGACATTATACTGCCCTAGGGAGCCTGAGGGTTGAGGCTAAACAGGAGGGAAGACTTGTCACAGGGTCCTGGGAAAGAAACAGTTTATTGTGTCCCTCCCGTCTGCAAAATGGACTAAAAGCAGCCTTCAGGCAGTCAGTGCCGGGAGTCCCCATAGGTATGGTCCCATCGAAGTTGCCCCTGTGACTGGACAGTCTTGGGCCCTCCTTCCTTAGTGGGGCTGGAGGACACCTCTTGGCTCCCCACTCCTTGTGTCTAACTCTGTAACCCTCTTGTGCCCCTGTAG
Seq C2 exon
GTGCAGCCGCAGGCTCCGCCTTTGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013694:ENSRNOT00000045919:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=98.3)
A:
NA
C2:
PF0005319=Laminin_EGF=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]