MmuINT0111287 @ mm10
Intron Retention
Gene
ENSMUSG00000035513 | Ntng2
Description
netrin G2 [Source:MGI Symbol;Acc:MGI:2159341]
Coordinates
chr2:29204898-29207590:-
Coord C1 exon
chr2:29207418-29207590
Coord A exon
chr2:29204925-29207417
Coord C2 exon
chr2:29204898-29204924
Length
2493 bp
Sequences
Splice sites
5' ss Seq
CCTGTACGT
5' ss Score
5.32
3' ss Seq
AACCCTCTGTGCCCCTACAGGTG
3' ss Score
11.74
Exon sequences
Seq C1 exon
GTGTAAGTGCAACCTGCATGCCAACCTGTGCACAGTGCGAGAGGGCAGCCTGCAGTGTGAGTGTGAACACAACACCACGGGCCCCGACTGTGGCAGGTGCAAGAAGAACTTCCGCACACGCGCCTGGCGAGCTGGCTCCTACCTGCCGCTGCCCCACGGCTCTCCCAATGCCT
Seq A exon
GTACGTATGTAGCCTGCCCAGCTGCAGTCCTTATTCTGTGCCCCAGCACGGTGGCTCACACGTGCACGTGCGTGCACACACCCACACACCCACACAGAGGAGGGGAGGGGGCAGCTGACATGGATACACACATGTTATCACCCAACCCAGCTTCCCTCCTGTGTTTTCTAGGCTGTATTCTCTCAGCCCTAGTTGCAGGCAGGCCAACCCTTCTCAGCATCTTGTCTTCCATCCTTCTTCATTCTGAGCAGGGCAGGAACCCCATGGAGATGCAGAACAGGGGTACGGTGAATGCACCCTAACACCGGGTCTTATGAGGTGTATACCACAGCTGCCAGCACTCAGTGGAACTTTCACACTTAGTAGCTATGTCCTTTGAGATGCTTGGTCTGAGCCCCTGCTCTCAGACCAATCTTTTTTTGTTTGGTTGGTTTTTTTGTTTTTTTTGTTTTTTTAGTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTACCTCCCAAGTGCTGGGATTAAAGCCGTGTGCCACCACACCCAGCCTCTCAGCCCAATCTTTCCCCCCCTTGTTCACCATCAGGGGAAGCCAAGTGAGAGATTTGTCCACACGTCTGCATCATGAGCACCCTTCGAGGGACCCCCCTCCCCAGAATATGCTTCATGAAATCACAGCTCCCACAAGTCTCTAGGCTGTGAGCAGCAGAGAGCCTAGGTTGGCACATGAAACCAAATGACCTGTCCCAGTCTGAGGCTGCACCAGATGTCACATGTCGCTTCCCTGAGTCCTTACAATACCACAGGAGTGCTGTAAATAACCCACCCTCCAGATGAGCACCCAGAGGCCCAGACAGCCCAGTCCCCTCCTGGTTCCATGGCCAGTCCCAGACAGCACAGGACCCAGTGACAAAGCCAGGGCCTACATATCCTAAACCACCTGTCCCATCCTGCCCCCTTCCTCACCCCTGAAAGATTCATGGGGCTTTAGACTGATCAAAGCTAAAAGCTGCAGCGAGGCAGCCGGTGACAGGCGTGGTGTGCGTGGGTTACAGCAGGCAGTGTGACAAGCCTTTGAAGAGGTGACTTGCCAGCCACCCCGAGGCACTCAAGGGTCTTCAAAGACACAGAATGGGCTTGGCGGCTGTTGGCCTGCCCCCCGTCAGGCTCCCTCATCCCGGGCAGCTCTCCACATCTCTTTGTATCCTGAGCCTTCCTTTAGTCCTTGTTGCTGTCTCTCACTAGTGGCTTGTCGCCCTTCCATCTGTCCTAAGGCCAGACCCAACCCCCCTGCACTTTTGCTCTGGCTCCTTCCTCAGCCTCCTAACTATCACCTCCACCACCAAGGACCAAGACTCGGACCTGCACAGCACCTAGGGCCACTGTCCCCATGCTCTGCTTAAGCAGTGGACAAACAGACCCCCGTGGCTTTTGTGTGTCTTGGCTCCTCCCTGCCCTGAGAGCCTGCCCCCCACCCCCACTTCCATCTACTTACCTCCTCTCAGGGACCTTCTCTTCATAATCACTGGGGCACCCCCTCCTGGGTGCCCACTACCTCAAAGCCTTGGAACGAAACCCTAAGTTGTCAATCCCCACCACCACCACCAAGTACAAGGCCCCTGTGAGATCACCCTACCCCATTCCTCCATGTCTCCCTATCCCCCAAGCCAAAATCCTCTATGCCCTGTCTCTTGGGACTGGACCGTCCTCTCCCTCAGGGGCAGACTCTGAGGGAGTCTTGACTCTACACCCCACTCCCAGCATCTATGAGTCCTCGCTCTCAGCTCCTACACTCCCAGGGGCTTGTCCATAGCACACACATATGGGACCTGCCGAAGTGTGTAAGACCAGAGTAGATGCCAGGAAAGGCATGTCGCCCACCCAGTCCACTGTCCCCTCCTAGGGTAAAGCCTTTCTCAGAACCACCTAAAGTGAAGCCATGACTGACTCCTTCCTTCCATGACTGTGACAGTTCTCCTCTGGGATGGTGACATCCTCTCCCACAGAGGCACAGAGAGACTTGAATTCAGCTTTTCCATGCCCCCCACCCCCACCCCAGAACATGCTTCATGAAATCACAGCTCCCACAAGTCCCCCAGCAGGCCAAGGCCACGCCCCTGATTCCATGCTGCTAACTCTGTGCATGATGGCATTGTGCTGCCCTAGGGAGCCTAGGGTGAGGTTAAACAGGAGGGAGGACTTGTCACAGTGTCCTGGGGAAGAAACAGTTTACAGTGTCCCATCTGCAAAATGGACTAAAAGCAGCCTTCAGGCAGTCAGTAGCGAGAGTCCACATAGGTATGATCCCACTGAGGATGCCCCTGTGACCAGACAGTCTCAGGCCCTCTAAGTCTCCTTCCCTTTAGTGGGGCTGGAAGACACTTCTGTGGCTCCCCATTCCTTGTAGACTTCCTGTGCCAAGTGGAGGTGGCCAGGCCTTGTGTCTAACACTGTAACCCTCTGTGCCCCTACAG
Seq C2 exon
GTGCGGCCGCGGGCTCCGCCTTTGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035513:ENSMUST00000048455:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.002 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=98.3)
A:
NA
C2:
PF0005319=Laminin_EGF=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types