BtaINT0105908 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019146 | OSBP2
Description
oxysterol binding protein 2 [Source:HGNC Symbol;Acc:HGNC:8504]
Coordinates
chr17:71881278-71882322:+
Coord C1 exon
chr17:71881278-71881395
Coord A exon
chr17:71881396-71882273
Coord C2 exon
chr17:71882274-71882322
Length
878 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
CTCTCCTTTGTTTCCCACAGAAA
3' ss Score
12.1
Exon sequences
Seq C1 exon
GAAGCCTCTTCACCAGCAAAGCCGAGGACAGTGAGGACGATGAGGACACAGAGTACTTCGACGCCATGGAAGACGCCGCGTCCTTCATCACCGTGACCACTGAGCCCAGCGAGGACGG
Seq A exon
GTGAGCGCTCGGCGCCCACTCCCGGGCCGGCCTGCCCCTCACGCGCCTCCGCTCTTTGCACTCCGGGTTTTCTTCTCAGTCGTGGTCCAGACGGGAAGCCTCTCATTCTCCACCTCGAAGCTTTTGTTTCATTTCTCGTAAAAGCCAGCTCTTTCAGAAATGATCTGTCTAAATACTCGTTAGTAGTGACCGGGACAGCTGACAGCCACGCTGCCAGTCTCGGGGCCTCAGGACACAGCCAGGCGTGCGGGAGCTGGCAGGATGTGCTGGAGGAGGAGAGGGAGGTGGGGCTGTGGGCAGGGGAGCGCGCGGGGCGGGAGCGCGGGCTTCACGGGCTTAGGGCATGGGCCTCACCAGGGCCGCTCACTCTCGCCAGGGCGCCTCAGGTCCTGACACCCGGGGGGGCTGCGTTGGTAGGCATGGGGGCCCTGAACTCGATCTGGGAAGGAGCTGCCTCTCCACGTCCTGGGGACACCGACAGAACCGCAGCCCCGTGCCCGTCCCCAGGCGTGTCTGGCTTCCCGGCAGCCCCAGACCCACGCCTGTGCTACTGCCCCTCAAAACCCAGCCAGGCAGGAGGGGGCCCGTGAGAACCTGTGGCTGCTCCTCCTCTGCCTTCGTGGGCCAGCACGTCTCACCACCTCCCTGTCCTGGCTTCTTCCAGGGAGAGGCCTGGTCTGGAGTCCTCTTACCCGCTTAGGGAATTTCTGGTCAGCTCAGCAGGATATTTCCAACTCAGAGTCATCTTCTGTTTCCCAATAATGTTTGAAACAAAGTCTTGAAAATTCTGGCTGCCCAGGGAGCTGGATAGAAGGGGGCCAGGCCCCCAGGAGGCCTTGGGATTTGGAAACAACTTGCCTCTCCTTTGTTTCCCACAG
Seq C2 exon
AAAAGCTGAGGCAGGGACTGCAGGCTCCGTGGAATGGACCGCAGACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019146:ENSBTAT00000025485:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.775 A=NA C2=0.882
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development