GgaINT0008011 @ galGal3
Intron Retention
Gene
ENSGALG00000007758 | F1NRB3_CHICK
Description
NA
Coordinates
chr15:11044283-11044656:-
Coord C1 exon
chr15:11044539-11044656
Coord A exon
chr15:11044364-11044538
Coord C2 exon
chr15:11044283-11044363
Length
175 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGA
5' ss Score
10.03
3' ss Seq
GTGGCACTTTGTCCCTGCAGGCG
3' ss Score
9.48
Exon sequences
Seq C1 exon
GGAGCGTGCAGTCTGCCAAAGGAGAGGCCAGTGATGAAGATGAAGAGACGGAGTATTTTGATGCCATGGAGGATGCACCAGCTTTTATCACTGTAACCGCAGACCCCAAGCACCACAG
Seq A exon
GTACGAGCTGCAGCCCTAAGGCTTGGTGAAACTCATGGGAAGAGCATGAGAAAGACTGCTTGCTGGGTGTTGTGCTTGGCTTTGGGACAGCACCTGAGTGGTAGTGGCTGTGCTGCACTGCCCCGACTCCTCTGTGCTGTTCCCACCTTCACCAGGTGGCACTTTGTCCCTGCAG
Seq C2 exon
GCGTTCGGGCAGTAACCTGAGTGGGGCCAGCGAGGGCCACCCTGAGGACTGGAACCTGGAGGACAGCGTGAGTTGGGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007758:ENSGALT00000012578:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.775 A=NA C2=0.857
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGTCTGCCAAAGGAGAG
R:
TCTGCCCAACTCACGCTGTC
Band lengths:
194-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]