RnoINT0105697 @ rn6
Intron Retention
Gene
ENSRNOG00000019645 | Osbp2
Description
oxysterol binding protein 2 [Source:RGD Symbol;Acc:1310505]
Coordinates
chr14:83955096-83956919:-
Coord C1 exon
chr14:83956802-83956919
Coord A exon
chr14:83955151-83956801
Coord C2 exon
chr14:83955096-83955150
Length
1651 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
CTCCCCTTCGTTTTCTGCAGAAA
3' ss Score
11.86
Exon sequences
Seq C1 exon
GAAGCTTCTTGACTTCCAAAGGGGAGAACAGTGAAGAAGATGAAGATACTGAGTACTTTGATGCCATGGAAGACTCCACATCTTTCATCACCGTAATCACCGAGGCCAAGGAAGACAG
Seq A exon
GTAGGACGCTCTGAGCAGAGATGGCTGCCGCAGCCTGGGAGGGTTTCTGGTTCTTAGGCACACTTGGGTTATTCTTTCCATCTCAGGCAAGATAGCATTGCTTATCTGTTTTTGTTAGCCATAAATAAGAATGCCCGAATGGTTTGCACCTAGAGGTTAGCCAGGGCGCCAGCTGGATCGCTTCCAGTCTGGAGGGAGACAGAAGAGGGGGGAAAGACCCAGCAAACGCAGCTGCTCAGAACCACACAGGTTCCTTTTGCTCCGTCCAGCGTGATCATTTGGTAACAGACGAGACGCCCACTCCCGTTTCCTGTCGTGAAGCCTGTTTCATACACGCTTGCCCACTTGGGCTGTTTCTAGGATCACAGGTAAACATACAGTAGTGGCCAGAGAGGATGTCAGACTCTCGGATCCATAGGAAAGGCTCGAGATGCGGCTTATCTGACAACCAGGTGCAGGAGCAGAGTGGGAAGCAGACAGGGTGGGCAGGAGCTGTGCTCAGGGGACTCAGGCTGGTGACAAGTGCCAGCCATCTTCTTCTGGGGAAAGAGCTGTCTAACCAGTAGTGTGTGTTCAGCTCAAAAACTGTTTCCTAGGAATATTAAATTTTAAAAGAAAGAAGAAAAAGAGAAAAAATCTGGGTATGGTGGCACACCCCTTTAATCCCAGTACTCAGGAGACAGAGGCAGATAGATCTCTATGAGTTCAGCCTAGGGCCGAAGAGATACATGGTTCAGTGGTTAAGAGCGCTGACTGCTCTTCCAAAGGTCCTGAGTTCAATTCCCAGCAACTACCTGGTGGCTCGCAACCATCTGTAATGGGATCCAATGCCCTCTTCTGGTGCGTCTGAAGACAGCTACAGTGTACTCATATATAATAAATAAATAAATCTTTAAAAAAAAAAAAAAAGAGTTCAGGCCAGCCTGGTTTACAGGAGTTCCAGGCAAGCCGGGGCTACATAATGAGTTCCTGTGTTTAAAGAAAGGAAAAAAAAGGCTACAGTAGCATTTTAAATCCAGAGCTGGCATAGAGCACGACCTGGCTGTCTGAACTTCCACCCACTCCAGCAACATCATCAATCCTTATGGTTCTGCAACCAGGGTGAACCTGCTCTCCTCATCTCCAAGGGTTCTGGGCTCCATACAGTCAACTGCTTCCTGCCCGTCTCCTGAGGCTCTGGCTGCCTGGCTGAGCCACACTGCCCATCCACAGGCTCCTAGAGCCCGGGCCCATCAGCCTCAGTGCCCCTGCAGGTATAGCGGCCTATCCCATAAGTGAGAGAACAGGAGGGGACATTTCAGGACCCCCAGTGTAGGAAGCACATGAAGGCACACTTCGTCTGTGGGATAAATGGGCCCATGGGCTCCTACCAGGCTCTCCCAGACTCTCCACTTGTCTTCTCCTTGGGCCTGGGTATAAGGACTCTAGGCAAGGGCTTTGCTGAGCCTCCCGTACTGAAAGCAATGACGAAGGATTGGGCCTCTCTGGACTGCTGTCTGGGTCCCTCTGCCCTCAGCTCCTGTCCCACAACAGACATGGATAGGATGCCTTTGGGCTGCCTCGCACCTTGGCTGTCTGGATTCAGGGAGGGCAGGGTTAGAGACAGTTGTCAGAACTTGTCCACAACTGGACTCCCCTTCGTTTTCTGCAG
Seq C2 exon
AAAGCCTGAGGGTGGACCTGGGACGACCTCTGTGGACTGGACCTCAGCAGATAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019645:ENSRNOT00000065501:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.650 A=NA C2=0.789
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]