GgaINT0008011 @ galGal4
Intron Retention
Gene
ENSGALG00000007758 | OSBP2
Description
oxysterol binding protein 2 [Source:HGNC Symbol;Acc:HGNC:8504]
Coordinates
chr15:10708781-10709140:-
Coord C1 exon
chr15:10709023-10709140
Coord A exon
chr15:10708848-10709022
Coord C2 exon
chr15:10708781-10708847
Length
175 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGA
5' ss Score
10.03
3' ss Seq
GTGGCACTTTGTCCCTGCAGGCG
3' ss Score
9.48
Exon sequences
Seq C1 exon
GGAGCGTGCAGTCTGCCAAAGGAGAGGCCAGTGATGAAGATGAAGAGACGGAGTATTTTGATGCCATGGAGGATGCACCAGCTTTTATCACTGTAACCGCAGACCCCAAGCACCACAG
Seq A exon
GTACGAGCTGCAGCCCTAAGGCTTGGTGAAACTCATGGGAAGAGCATGAGAAAGACTGCTTGCTGGGTGTTGTGCTTGGCTTTGGGACAGCACCTGAGTGGTAGTGGCTGTGCTGCACTGCCCCGACTCCTCTGTGCTGTTCCCACCTTCACCAGGTGGCACTTTGTCCCTGCAG
Seq C2 exon
GCGTTCGGGCAGTAACCTGAGTGGGGCCAGCGAGGGCCACCCTGAGGACTGGAACCTGGAGGACAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007758:ENSGALT00000012578:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGTCTGCCAAAGGAGAG
R:
CTGTCCTCCAGGTTCCAGTCC
Band lengths:
179-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]