RnoINT0105683 @ rn6
Intron Retention
Gene
ENSRNOG00000021057 | Osbp
Description
oxysterol binding protein [Source:RGD Symbol;Acc:1308069]
Coordinates
chr1:228407880-228408471:+
Coord C1 exon
chr1:228407880-228407982
Coord A exon
chr1:228407983-228408416
Coord C2 exon
chr1:228408417-228408471
Length
434 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
3' ss Seq
TCTGTTTTTCCTCCACGAAGACG
3' ss Score
5.22
Exon sequences
Seq C1 exon
AGCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAACGAATTCTTTGACGCACCAGAGATTATCACCATGCCTGAAAACTTGGGCCACAA
Seq A exon
GTAAGCTGTCCTTGACTGTTGCAGAGAGTTAACATGTGTTTGCATGATGAGATCTTTCCCATGACACTCTGAGAAAGTTAACATGTGTGTTTGCATGATGAGATCTTTCCCATGAGACTCTGAGAAAATTAACATGTGTGTTTGCATGATGAGATCTTTCCCATGAGACTCTGAGAAAGTTAACATGTGTGTTTGCATGATGAGATCTTTCCCATGACACTCTGAACTGGCGATAGTCACGAAGATGTGGACTTTTTGTGTTAAGTAGATGGGAAAACTGTTAGCACTTACATTGAATTTTCCAGAGATCCCAAACTCATACCCATTCTAAGTATGCGCAGTATATTTAGTATTGTGCTTCATAAAGAGCTGGTGAGGACCAAACTTTAGTTCTGGTCTTTGTTCTAATTCTTCTCTGTTTTTCCTCCACGAAG
Seq C2 exon
ACGTACTGGTAGCAATATCAGTGGAGCCAGCAGTGACATCAGCCTTGATGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021057:ENSRNOT00000065411:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.886 A=NA C2=0.789
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]